Gene
| Gene Model ID | habu1_s7897_g18372 |
|---|---|
| Locus | habu1_scaffold7897 : 1241266 ... 1280595 : + |
| To GenomeBrowser | habu1_scaffold7897:1241266..1280595 |
| Genes list of scaffold | habu1_scaffold7897 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable atp-dependent rna helicase partial | GO:0004386 GO:0005524 GO:0005730 GO:0008152 GO:0044822 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s7897_g18372.t1 | 1 | 1 | DEAD | 406 | 578 | 0.0 | 159.0 | 0.0 | 0.0 | 156.2 |
| habu1_s7897_g18372.t1 | 1 | 1 | Helicase_C | 649 | 724 | 8.6e-24 | 83.2 | 1.5e-26 | 5.5e-23 | 80.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s7897_g18372.t1 | gi|602630065|ref|XP_007421951.1| | PREDICTED: probable ATP-dependent RNA helicase DDX46 [Python bivittatus] | 0.0 |
| habu1_s7897_g18372.t1 | gi|637326080|ref|XP_008113719.1| | PREDICTED: probable ATP-dependent RNA helicase DDX46 isoform X1 [Anolis carolinensis] | 0.0 |
| habu1_s7897_g18372.t1 | gi|637326084|ref|XP_008113720.1| | PREDICTED: probable ATP-dependent RNA helicase DDX46 isoform X2 [Anolis carolinensis] | 0.0 |
| habu1_s7897_g18372.t1 | gi|700359870|ref|XP_009924398.1| | PREDICTED: probable ATP-dependent RNA helicase DDX46, partial [Haliaeetus albicilla] | 0.0 |
| habu1_s7897_g18372.t1 | gi|729761134|ref|XP_010577496.1| | PREDICTED: probable ATP-dependent RNA helicase DDX46 [Haliaeetus leucocephalus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 28.0 |
| Venom grand-1 | 21.9 |
| Pit, infrared sensing | 22.5 |
| Nose | 24.5 |
| Brain-1 | 24.3 |
| Eye | 23.6 |
| fetal fibroblast | 50.2 |
| venom gland-2 | 60.5 |
| Brain-2 | 23.6 |
| Spleen | 20.7 |
| Lung | 21.1 |
| Liver | 20.6 |
| Kidney | 27.0 |
| Pancreas | 18.4 |
| Small intestine | 20.6 |
| Large intestine | 19.6 |
| Stomach | 21.0 |
| heart | 30.7 |
| ovary | 34.0 |
| cheek muscle | 105.5 |
Transcript
| Transcript ID | habu1_s7897_g18372.t1 |
|---|---|
| Definition | - |
>habu1_s7897_g18372.t1 ctttgaggagccgacccgggagagaaagccgtccctcttcgcggcttcgggggcgctgccatgggtcgggaatcgagatc aacaaagcaacagttgtccaaacaaaaacagcattatcggaagcgctcctcatcacgagggcgctctggtagccgttccc gcagtcgttctccatctgacaaaagagcaaaacgtggagatgacaggcgctctaggagtcgagacagagaccgcaggcgt gagagatcgcggagcagggacaagaggaggtctcgatcgcgtgacagaaaacgggtgaggcgctcaagaagtagagagag ggaaaggagtagagagagaagacgatcacgcagccgggagagaagacgatctagaagccgaagcagaggcagacggtctc gatcttccagccctggcaagagcaagaaagtagaaaacagatcacgctctacagaaaagacagaaggtgtggaagttaac aaagacaagaaaaaagagaaagaggacaaggaagaagaaaaagataaagatgtaaataattttgatcaaaataaattgga agaggaaatgagaaaacgaaaagaacgagtggaaaaatggagagaagagcagcgcaagaaagctatggaaaatataggag aactgaagaaagaaattgaagagatgaagcaggggaagaaatggagtttagaagatgatgatgatgacgatgaagaaact gcagaaggagaaaaagaaggtaatgaaattgaagatgaagagttagatccactagatgcatatatggaagaagtaaaaga agaggtcaagaagtttaatatgagaagtgtaaaaggtggagctggaagtgaaaagaaatcgggtccaacagttacaaaag tagtaactgtagtgaaaaccaaaaaagcttctccagagacagaaaagaagaaaggagaactcatggtgaatgatcaggat gcaatggagtattcctctgaagaggaggaagttgatctccagactgcactgacaggttaccaaacgaaacataggaaatt gctggaaccagtggatcatgggaagattgaatatgagtcttacaggaaaaatttctatgttgaagttcctgagctagcca aaatgactctggaagaggtaaatgcatacagattggaaatggaaggaattacagtcaagggtaaaggatgtcctaagccg atcaaaacctgggtccaatgtggtatttctatgaaaatcctgaattccatgaaaaaacatggctatgaaaagcccacccc tattcaggcccaagctatacctgcaattatgagtggacgtgatttaattggcattgctaaaacaggaagtggaaagacta ttgcatttctgctgcccatgttcagacacatcatggatcagagatcattagaagaaggcgaaggtccaatagctgtcatt atgacacctactcgagaactagctctacagattacaaaggagtgtaagaaattctcaaagacccttggggttagagtcgt atgtgtatatggaggaacgggaataagtgaacagattgctgaactgaaaaggggtgcggaaataatagtttgcacacctg gccgtatgattgatatgttagcagctaataatggtcgggtgacaaaccttcggagagtgacatacgttgtccttgatgaa gcagatagaatgtttgacatgggctttgagcctcaggttatgcgcattgtagacaatgtgagacctgatcgccagaccgt gatgttttctgctactttccctagagcgatggaggctttagctcgccgtattctcagcaaaccaattgaggtccaagttg gtggacggagtgttgtctgttcagatgttgaacagacagtgattgtcatagaagaagagaacaaattcttgaaattgctt gagctactaggacataatcaggaaaaaggagctgtcattatatttgtggataaacaggaacatgctgatggattgctgaa agacttgatgagagcttcttacccctgtctttcacttcatggaggtattgaccaatatgacagagacagcataatcaatg attttaagagtggagtatgcaaactgcttgtggctacatcagtagcagctcgaggtcttgatgtaaaacaacttgtgctt gtaatcaactacagttgtcctaatcattatgaagattatgtgcacagggcaggcagaactgggcgtgcaggcaacaaagg ttatgcctataccttcataaccgaagatcaagcacggtatgctggtgatataattaaagctttggagttgtcaggtgcca cagtgcctcaagagttagagaaactttggattgatttcaaagatcagcagaaagctgagggaaaaacaattaaaaagagt agcggcttctccggtaaaggattcaagtttgatgaaacagaagaagctttggctaatgagcggaagaagttacaaaaagc ggcacttggcttgcaggattcagatgatgaagatacagcggttgatattgacgagcagattgaaagcatgttcaattcaa agaaaagagtgaaggacatggcatcatctggtggttcatctaatgttcctgccccaacagcaggaaatgcagagaaatta gaaattgctaagagattggcattgagaatcaatgcacagaagaatcttggagccgaggcacaagtattggtctcttttca atttaaggatgtgatgcagcaagctacaaacgctatcctgaggggtggcacaattcaggctccaacagtttctgcaaaaa ctattgcggagcaactcgctgagaagatcaatgccaaactcaattatgtacccatagaaaaacaagaggaggagaagcag gagggcggacaaaatgaatcttttaagagatatgaggaagaactggagatcaatgatttccctcagactgctagatggaa agtgacttcaaaggaagcactgcacagaataagtgaatattctgaagctgccattacaatcagaggaacctattttcctc caggcaaagaacccaaggagggggaaagaaaaatttacttggctattgagagtgccaatgaattggctgttcagaaagca aaggcagaaatcaccaggcttatcaaagaagagcttatccgattgcaaaattcataccaaccaaccaacaaaggaagata caaagttttataaatatttggagcaactttctctctactagtttctcgtttgtgaaacatttttgtttacctttgttgtt tactgcttatttgtacattgcttttaaaaaatattgtgatttgattaaagatcaagatcaaaattattttggtgggggat tgttttctgcatatagaaccacagtttcaaatgagcataattattattttttatttgtattgttttcattttcaacttac taaataaagtcagttaataatcttcatgaa |
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Protein
| Protein ID | habu1_s7897_g18372.t1 |
|---|---|
| Definition | - |
>habu1_s7897_g18372.t1 MGRESRSTKQQLSKQKQHYRKRSSSRGRSGSRSRSRSPSDKRAKRGDDRRSRSRDRDRRRERSRSRDKRRSRSRDRKRVR RSRSRERERSRERRRSRSRERRRSRSRSRGRRSRSSSPGKSKKVENRSRSTEKTEGVEVNKDKKKEKEDKEEEKDKDVNN FDQNKLEEEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDDEETAEGEKEGNEIEDEELDPLDA YMEEVKEEVKKFNMRSVKGGAGSEKKSGPTVTKVVTVVKTKKASPETEKKKGELMVNDQDAMEYSSEEEEVDLQTALTGY QTKHRKLLEPVDHGKIEYESYRKNFYVEVPELAKMTLEEVNAYRLEMEGITVKGKGCPKPIKTWVQCGISMKILNSMKKH GYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSK TLGVRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNV RPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQTVIVIEEENKFLKLLELLGHNQEKGAVIIFVDKQE HADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKSGVCKLLVATSVAARGLDVKQLVLVINYSCPNHYEDYVHRAGRT GRAGNKGYAYTFITEDQARYAGDIIKALELSGATVPQELEKLWIDFKDQQKAEGKTIKKSSGFSGKGFKFDETEEALANE RKKLQKAALGLQDSDDEDTAVDIDEQIESMFNSKKRVKDMASSGGSSNVPAPTAGNAEKLEIAKRLALRINAQKNLGAEA QVLVSFQFKDVMQQATNAILRGGTIQAPTVSAKTIAEQLAEKINAKLNYVPIEKQEEEKQEGGQNESFKRYEEELEINDF PQTARWKVTSKEALHRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQNSYQ PTNKGRYKVL |
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