Gene
| Gene Model ID | habu1_s7897_g18382 |
|---|---|
| Locus | habu1_scaffold7897 : 1717965 ... 1782020 : - |
| To GenomeBrowser | habu1_scaffold7897:1717965..1782020 |
| Genes list of scaffold | habu1_scaffold7897 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| neurogenin- partial | GO:0000785 GO:0000989 GO:0003682 GO:0031536 GO:0042472 GO:0043204 GO:0045165 GO:0045666 GO:0045944 GO:0046983 GO:0048666 GO:0051091 GO:0070888 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s7897_g18382.t1 | 1 | 1 | HLH | 82 | 133 | 7.0e-17 | 60.8 | 9.5e-21 | 7.0e-17 | 60.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s7897_g18382.t1 | gi|602633544|ref|XP_007423650.1| | PREDICTED: neurogenin-1 [Python bivittatus] | 0.0 |
| habu1_s7897_g18382.t1 | gi|327278494|ref|XP_003223997.1| | PREDICTED: neurogenin-1 [Anolis carolinensis] | 0.0 |
| habu1_s7897_g18382.t1 | gi|557002422|ref|XP_006003536.1| | PREDICTED: neurogenin-1 [Latimeria chalumnae] | 0.0 |
| habu1_s7897_g18382.t1 | gi|530645742|ref|XP_005309527.1| | PREDICTED: neurogenin-1 [Chrysemys picta bellii] | 0.0 |
| habu1_s7897_g18382.t1 | gi|558130152|ref|XP_006116148.1| | PREDICTED: neurogenin-1 [Pelodiscus sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 3.7 |
| Venom grand-1 | 14.6 |
| Pit, infrared sensing | 4.7 |
| Nose | 3.8 |
| Brain-1 | 2.9 |
| Eye | 4.7 |
| fetal fibroblast | 1.1 |
| venom gland-2 | 13.4 |
| Brain-2 | 4.3 |
| Spleen | 10.2 |
| Lung | 11.5 |
| Liver | 11.7 |
| Kidney | 29.1 |
| Pancreas | 21.2 |
| Small intestine | 10.9 |
| Large intestine | 13.0 |
| Stomach | 16.0 |
| heart | 16.6 |
| ovary | 0.7 |
| cheek muscle | 21.2 |
Transcript
| Transcript ID | habu1_s7897_g18382.t1 |
|---|---|
| Definition | - |
>habu1_s7897_g18382.t1 gcttgaagtgagtatgagccagaaacgcaggcaggaaagcaattgctagctggcttcgtagatagattagggcgctgagg atgtcttctgctttggagaccagctactctgaccttgacaacagcagtgacgtgtccttttgtgtcacagatgatgaagg gagcctcgggggcctgcagatcccttccctggcctttcccaaacacgttgcctccccagagcctggctcccagaggtgcg aagaagagaaagaacgggggaagaggcgaaggggacgcaccaaggtcaagaacgaagctgtccttcacaccatcaaaaag accaggcgggtcaaagccaacgacagggaacggaatcgaatgcataatctcaacgcggccctggatgaactccggagcgt cctgcccacttttccagacgatactaagttgactaagattgagaccctgcgctttgcctacaactacatctgggcccttt cggaaaccctgcggctggctgatcagtgccgtcagaaagcccccaaagagacggtgctgcctggtttcttgggttccacc gatccacccagccctggcagtgatgctggatcctggatttccacagcatcccctgccacctcttctctctctgcctgcac ttcaagtcccagcagcccagccacctctgaagactattgttatgggcccgtcctgagctcttgggggcatcaatatgatt tagaaaagagatttggaaaccacacattgaagaaagtcacacaatactgtgagtctcagatccagccactctcagcctgt cgtgttcattctgttgagaacaaagcagatgtgaagctgcagaacgcgatcgccgtgctcacaaccgtgcatcctcaagt ctggctgcacgtcgctctgctgcttcctcggcacgtatttgagccattctttgtctgtttcgctcgttcgctgatgcccg ttcttcctcagtttgatttgcaattactcgttgcactgcttccgctccgcaagtacgacgacctaagtttgatcttctgc gaggcattatttggatgaactaaagcagatcgattgcactgaaaaagaagaaagttataacaaaaacatataaaattgca aaacattaaaaaaggggaaaaacacgaactaaaaaacaaagaaaaaacaaaaaaaataaaaaatactaacgaaatatttt aattcagacgcagatcaatcgacacagctcaattccaccgccaattgcattgaaaaataagaaaaacaggtaaaaaaaca aaatgaaaaacaatgaaaaaataaaaaaataaactatactcaagaaatgaacgct |
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Protein
| Protein ID | habu1_s7897_g18382.t1 |
|---|---|
| Definition | - |
>habu1_s7897_g18382.t1 MSSALETSYSDLDNSSDVSFCVTDDEGSLGGLQIPSLAFPKHVASPEPGSQRCEEEKERGKRRRGRTKVKNEAVLHTIKK TRRVKANDRERNRMHNLNAALDELRSVLPTFPDDTKLTKIETLRFAYNYIWALSETLRLADQCRQKAPKETVLPGFLGST DPPSPGSDAGSWISTASPATSSLSACTSSPSSPATSEDYCYGPVLSSWGHQYDLEKRFGNHTLKKVTQYCESQIQPLSAC RVHSVENKADVKLQNAIAVLTTVHPQVWLHVALLLPRHVFEPFFVCFARSLMPVLPQFDLQLLVALLPLRKYDDLSLIFC EALFG |
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