Gene
| Gene Model ID | habu1_s878_g03103 |
|---|---|
| Locus | habu1_scaffold878 : 52356 ... 62379 : + |
| To GenomeBrowser | habu1_scaffold878:52356..62379 |
| Genes list of scaffold | habu1_scaffold878 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s878_g03103.t1 | 1 | 1 | GCOM2 | 41 | 81 | 2.0e-07 | 30.9 | 1.8e-11 | 2.7e-07 | 30.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s878_g03103.t1 | gi|724878202|ref|XP_010372564.1| | PREDICTED: protein GRINL1A [Rhinopithecus roxellana] | 6.0e-08 |
| habu1_s878_g03103.t1 | gi|586530956|ref|XP_006920387.1| | PREDICTED: DNA-directed RNA polymerase II subunit GRINL1A [Pteropus alecto] | 7.0e-08 |
| habu1_s878_g03103.t1 | gi|586447468|ref|XP_006831917.1| | PREDICTED: DNA-directed RNA polymerase II subunit GRINL1A [Chrysochloris asiatica] | 1.0e-07 |
| habu1_s878_g03103.t1 | gi|635135529|ref|XP_008014656.1| | PREDICTED: protein GRINL1A isoform X1 [Chlorocebus sabaeus] | 1.0e-07 |
| habu1_s878_g03103.t1 | gi|466032945|ref|XP_004274718.1| | PREDICTED: protein GRINL1A [Orcinus orca] | 1.0e-07 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 1.2 |
| Venom grand-1 | 1.1 |
| Pit, infrared sensing | 1.8 |
| Nose | 1.5 |
| Brain-1 | 1.2 |
| Eye | 1.4 |
| fetal fibroblast | 1.4 |
| venom gland-2 | 1.4 |
| Brain-2 | 0.9 |
| Spleen | 1.4 |
| Lung | 1.9 |
| Liver | 2.7 |
| Kidney | 2.0 |
| Pancreas | 4.1 |
| Small intestine | 2.0 |
| Large intestine | 1.7 |
| Stomach | 2.4 |
| heart | 1.1 |
| ovary | 1.2 |
| cheek muscle | 1.9 |
Transcript
| Transcript ID | habu1_s878_g03103.t1 |
|---|---|
| Definition | - |
>habu1_s878_g03103.t1 cccgcccggccgccgttatcagcttccggcaagatggcggcgcccagcaggcgggggaagagcgttgccccgccgcggac ggtctttcgttgcccgcatggggaagccgagccgaacccgctgagcgggcggagcctgccggagctgcgggagatgcttc tgcggcaggaaaggctgctgggcgaccgggcggcggtctcccggttgcccgacggcggcgagcgcgtgcgcgaatgcgcg gccaggctgcgggcggcggtggcggagcgcgagcggcggcggctgagcggcggcgacgcccgggggccgctggccggcct ctccttggcggcggcggagcggggccggcatggggccagcgcgcggcccggcggagccccccggaatgagaagcggcgcc cagaggacgccacagctctggagcctgatggccgctcatcacaagcattaggaaaggagagcaatgcctggccaaacagg ttcccaggcactgggatcaaagagcagcagtgcaggtgtagcagaaatctggctgccttggaatcttctctggtgctgcc acccctgcaggactgtggaatctcagcagcagaagaagtggctaggagacttgtggccaagcccgcaagtctttccttga tgtgcagagaaaccctcagcttcctgatgacaaaaaggagcgagtggcagagctgctgcctcttcggaatcgctgcccac cttatcgaaaaatgaagagaagtttctgtttatctacagactcatcctggcttggtcaacttctatcaactgaataatta acgcagtggttctcaacctgtgggtcgggaccccatttggggtcgatcgaccatttcacgggggtcgccaagcaaggctg tccgccatttttcccccttttccggcgggtgccttacctcccttgggctgggccagctggtggtcggcctgctccgtctc tgccgcttgccagctacgcctcggccggcgcagggggcggaaccacgcatgcgcggcgctcccgggcagggaaagtcctc gacttatgaccggttgggtagtcctcgacttacgaccggtttagtcctcgacttacgaccggttagtcctcgacttatga ccggttcagtcctcgacttacgaccggtttagtcctcgacttacgaccggctggggtcgcggcattaaaaaggttgagaa ccactgaatta |
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Protein
| Protein ID | habu1_s878_g03103.t1 |
|---|---|
| Definition | - |
>habu1_s878_g03103.t1 MAAPSRRGKSVAPPRTVFRCPHGEAEPNPLSGRSLPELREMLLRQERLLGDRAAVSRLPDGGERVRECAARLRAAVAERE RRRLSGGDARGPLAGLSLAAAERGRHGASARPGGAPRNEKRRPEDATALEPDGRSSQALGKESNAWPNRFPGTGIKEQQC RCSRNLAALESSLVLPPLQDCGISAAEEVARRLVAKPASLSLMCRETLSFLMTKRSEWQSCCLFGIAAHLIEK |
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