Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s878_g03114
Locus habu1_scaffold878 : 272216 ... 291678 : +
To GenomeBrowser habu1_scaffold878:272216..291678
Genes list of scaffold habu1_scaffold878

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
habu1_s878_g03114.t1 1 1 Pkinase 13 275 0.0 233.4 0.0 0.0 233.0
habu1_s878_g03114.t1 1 1 Pkinase_Tyr 14 268 1.2e-35 122.9 8.1e-39 1.7e-35 122.3

Blast Hit to nr / sp
query Subject ID Subject Name evalue
habu1_s878_g03114.t1 gi|602635196|ref|XP_007424466.1| PREDICTED: death-associated protein kinase 3 isoform X1 [Python bivittatus] 0.0
habu1_s878_g03114.t1 gi|723151097|ref|XP_010293015.1| PREDICTED: death-associated protein kinase 2 [Phaethon lepturus] 0.0
habu1_s878_g03114.t1 gi|698395216|ref|XP_009807377.1| PREDICTED: death-associated protein kinase 2 isoform X1 [Gavia stellata] 0.0
habu1_s878_g03114.t1 gi|701383830|ref|XP_009988538.1| PREDICTED: death-associated protein kinase 2 isoform X1 [Tauraco erythrolophus] 0.0
habu1_s878_g03114.t1 gi|697040061|ref|XP_009582589.1| PREDICTED: death-associated protein kinase 2 isoform X1 [Fulmarus glacialis] 0.0

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 1.5
Venom grand-1 2.3
Pit, infrared sensing 1.7
Nose 1.6
Brain-1 0.4
Eye 1.1
fetal fibroblast 1.2
venom gland-2 1.1
Brain-2 1.1
Spleen 3.4
Lung 2.0
Liver 1.4
Kidney 0.7
Pancreas 2.2
Small intestine 2.5
Large intestine 2.2
Stomach 4.5
heart 5.7
ovary 20.4
cheek muscle 17.7

Transcript
Transcript IDhabu1_s878_g03114.t1
Definition-
>habu1_s878_g03114.t1
ggtcgggcaccacccggcgatgcagctcagttagtgggactcccgtgacgcccgcttgcagagcgcagagtccaggaatg
gccgtgtttaagcagcagaaggtcgaggacctgtacgaaatcggggaggagctcggcagcgggcaatttgccatcgtgaa
gcggtgccgggagaaggctacggggctggactacgcggccaagttcatcaagaaacggcagagccgggccagtcgccgtg
gggtccggcgggaggagattgagcgggaggtgaacatcctgcaacagattctgcacagcaacatcatccagctgtacgag
gtttacgagaacaaaaccgacgtcgtccttatcctcgagctagtctccggaggggaactttttgatttcctggcccagaa
ggagtcactgagtgaggaggaagccacacagttcattaagcagatcctggacggggtcagctacctgcacaccaagaaga
tcgcccactttgatttaaagcctgagaatattatgctgctggacaagaaccttcccattccttacataaaactgatcgat
tttggtctggcccatgaaatagaagatggagtggagtttaaaaatatttttgggacaccagaattcgtagctccagaaat
cgtaaattatgagccgctgggactggcagctgatctttggagcattggagtcatcacttacatattgctcagtggtgctt
ctccattccttggggagacgaagcaggagacgctggctaacattactgccgtcaattatgaatttgatgaagaattcttc
agccataccagtgacctggcaaaagattttatccggaaacttttggtgaaagatacacggaaacgactcacaatccagga
agctctcgggcacccctggatccagtccaaagaaggctccagagcccaaggccacaggaggagtgagccccggccgctgg
agaccaagtggctgagagattacaccatcaagagccactccagcattcctccaaacaacacctacgccacctttgaacac
tttacccgcgtggtggaggtgatctctggcatggagaggagctttggcgccctggtagcctcccacgacaccttgcaggg
ggacatagatgccctggtctccatctacgatgagaaggaagcttggtacaaggaggagcatgaaagcgtgaagtatgagc
tttcccagctgaagtatgagcatcgcaagatcggatccttgaagaagcacctgaaggaggacatccaggccgtgggtgcc
aaccttgctggggtcgcagggaggtacctcggcctgcagtcgcactacgaacggctgagcaaggagctgtcggaggaact
caagtgggtccaagacttaacgggcagcttctggcctgagggcagcccccagggccacgcgccagccagcttcggctgcg
tcttccagaaggacctcaacgactcgctgatggagctgctgaacaggtcctgctgtgaagaattcctggcggccttaaac
ctgggcatgacaaaatccacccatgaacaaccaccaagccatggtaaggagggaatcggtcgttaacttggagaacttca
aaaagcagcacgccaggaggcggtggaagctcaccttcagtatagtggctctgtgcaaccatttatctcgctcgctggtg
cgaaaagttcgcttaaggcaagaagacagtttgcgccattgcgaaagtgatgaggaagacctgcctggccaaacggcagc
gtcccattgtctcctgaggcggaggagcagcatctcataactgggacccaccggttggactgccgctggagctgcagcgg
ctgagagccgagctcatggtatgagctgcttgccttccacacggcgtcaacctggaacctaaagcttcctg

Protein
Protein IDhabu1_s878_g03114.t1
Definition-
>habu1_s878_g03114.t1
MAVFKQQKVEDLYEIGEELGSGQFAIVKRCREKATGLDYAAKFIKKRQSRASRRGVRREEIEREVNILQQILHSNIIQLY
EVYENKTDVVLILELVSGGELFDFLAQKESLSEEEATQFIKQILDGVSYLHTKKIAHFDLKPENIMLLDKNLPIPYIKLI
DFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLAADLWSIGVITYILLSGASPFLGETKQETLANITAVNYEFDEEF
FSHTSDLAKDFIRKLLVKDTRKRLTIQEALGHPWIQSKEGSRAQGHRRSEPRPLETKWLRDYTIKSHSSIPPNNTYATFE
HFTRVVEVISGMERSFGALVASHDTLQGDIDALVSIYDEKEAWYKEEHESVKYELSQLKYEHRKIGSLKKHLKEDIQAVG
ANLAGVAGRYLGLQSHYERLSKELSEELKWVQDLTGSFWPEGSPQGHAPASFGCVFQKDLNDSLMELLNRSCCEEFLAAL
NLGMTKSTHEQPPSHGKEGIGR

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