Gene
| Gene Model ID | habu1_s878_g03125 |
|---|---|
| Locus | habu1_scaffold878 : 721844 ... 783414 : + |
| To GenomeBrowser | habu1_scaffold878:721844..783414 |
| Genes list of scaffold | habu1_scaffold878 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| nuclear receptor ror-alpha isoform x4 | GO:0001046 GO:0001222 GO:0001223 GO:0001525 GO:0003707 GO:0004879 GO:0005634 GO:0006805 GO:0006809 GO:0008013 GO:0008142 GO:0008270 GO:0008589 GO:0010575 GO:0010906 GO:0016342 GO:0019218 GO:0021702 GO:0021930 GO:0030522 GO:0032922 GO:0036315 GO:0042692 GO:0042753 GO:0043030 GO:0043124 GO:0043401 GO:0045599 GO:0045944 GO:0046068 GO:0050728 GO:0060850 GO:0070328 GO:0071456 GO:0072539 GO:2000188 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s878_g03125.t2 | 1 | 1 | zf-C4 | 34 | 102 | 4.4e-33 | 113.3 | 5.9e-37 | 4.4e-33 | 113.3 |
| habu1_s878_g03125.t2 | 1 | 1 | Hormone_recep | 266 | 452 | 6.4e-35 | 120.1 | 8.6e-39 | 6.4e-35 | 120.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s878_g03125.t2 | gi|602649762|ref|XP_007431282.1| | PREDICTED: nuclear receptor ROR-alpha [Python bivittatus] | 0.0 |
| habu1_s878_g03125.t2 | gi|637350176|ref|XP_008118164.1| | PREDICTED: nuclear receptor ROR-alpha [Anolis carolinensis] | 0.0 |
| habu1_s878_g03125.t2 | gi|635135385|ref|XP_008014579.1| | PREDICTED: nuclear receptor ROR-alpha isoform X3 [Chlorocebus sabaeus] | 0.0 |
| habu1_s878_g03125.t2 | gi|611968375|ref|XP_007479578.1| | PREDICTED: nuclear receptor ROR-alpha isoform X1 [Monodelphis domestica] | 0.0 |
| habu1_s878_g03125.t2 | gi|543353753|ref|XP_005521494.1| | PREDICTED: nuclear receptor ROR-alpha isoform X2 [Pseudopodoces humilis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.8 |
| Venom grand-1 | 0.7 |
| Pit, infrared sensing | 0.8 |
| Nose | 0.3 |
| Brain-1 | 4.3 |
| Eye | 0.8 |
| fetal fibroblast | 0.5 |
| venom gland-2 | 5.7 |
| Brain-2 | 5.5 |
| Spleen | 0.4 |
| Lung | 0.1 |
| Liver | 0.1 |
| Kidney | 0.0 |
| Pancreas | 0.5 |
| Small intestine | 0.2 |
| Large intestine | 0.1 |
| Stomach | 0.6 |
| heart | 0.3 |
| ovary | 0.4 |
| cheek muscle | 4.4 |
Transcript
| Transcript ID | habu1_s878_g03125.t1 |
|---|---|
| Definition | - |
>habu1_s878_g03125.t1 gacagacctccccagggctacttatgacccagattcagagttccgaccggcggtccctctctgaggtcacatgatcacat tatcggtgctcagcaaccagcctgcatttactgccattcacagcatttccctaacgaagaagacgcatacatctcaaatt gaaattattccatgcaagatctgcggagacaaatcttcaggaatccattatggtgtgattacctgtgagggttgcaaggg tttcttcaggagaagtcagcaaagcaacgccacatattcctgccctcgtcagaaaaactgcttaatcgatcggaccagta ggaaccgctgccagcactgccggttgcagaaatgcctcgctgtggggatgtctcgagacgccgtcaagtttggtcgcatg tccaaaaaacagagggacagcttgtacgcagaggtccagaagcatcggatgcagcagcagcagcagcgagaccaccaaca gccccctggagaagcggagccactgaccccgagctacagcatcacggctaatggcctgacggacctgcacgatgacctca gtaattacatagatggtcaccctcctgaagaacacctggcacagaacatttctaagtcacacatggaaacctgccagtac ttgagggaggagctgcaacagatcacctggcaaacgtttctgcaggaagaaattgagaactatcagagcaagcaaagaga gatcatgtggcagttgtgtgcggtgaagataacggaagcaatacagtatgtcgtagagtttgccaaacgcatcgacggct ttatggaactatgccaaaacgatcaaattgtgcttttaaaagcagggtctttagaggttgtatttatcagaatgtgtcgt gcctttgactctcaaaacaacacagtatacttcgatggcaaatacgctggcccagatgtattcaaatcattaggctgtga agatttcattagttttgtttttgaatttggaaagagtttatgttctatgcaccttactgaagacgagattgcattattct cagctttcgttttactatctgcagatcgatcgtggcttcaggaaaaggtaaaaatagaaaagctccagcaaaaaattcag tttgcgcttcaacatgtactgcagaaaaaccatcgagaagatggaatattaacaaagctaatatgcaaagtgtctacctt aagagccctgtgtggacgacatacagaaaagctcatggcgttcagagcaatatacccagacattgtacgacttcattttc ctcctttgtacaaggagttgttcacttcagaatttgagccgacggtgcagatggaagggtttgccattcggtgcaacctg cagagtctggcggtattcagcagcattaaacataaaggaaaaaagcagtgtttattatattgaagttattaattaaactg tctgctgggaggaggccaaaatgattaaatggttgtagctgtcatgattga |
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| Transcript ID | habu1_s878_g03125.t2 |
| Definition | - |
>habu1_s878_g03125.t2 gacagacctccccagggctacttatgacccagattcagagttccgaccggcggtccctctctgaggtcacatgatcacat tatcggtgctcagcaaccagcctgcatttactgccattcacagcatttccctaacgaagaagacgcatacatctcaaatt gaaattattccatgcaagatctgcggagacaaatcttcaggaatccattatggtgtgattacctgtgagggttgcaaggg tttcttcaggagaagtcagcaaagcaacgccacatattcctgccctcgtcagaaaaactgcttaatcgatcggaccagta ggaaccgctgccagcactgccggttgcagaaatgcctcgctgtggggatgtctcgagacgccgtcaagtttggtcgcatg tccaaaaaacagagggacagcttgtacgcagaggtccagaagcatcggatgcagcagcagcagcagcgagaccaccaaca gccccctggagaagcggagccactgaccccgagctacagcatcacggctaatggcctgacggacctgcacgatgacctca gtaattacatagatggtcaccctcctgaaggtagcaaagccgactctgcggttagcagcttctacttagacatacagcct tctccagaccagtcggggcttgatattaatggcatcaaaccagaaccaatctgtgactacacacccacgacgggcttctt tccatattgctcctttaccaatggggagacctctcctactgtgtccatggcagaattagaacacctggcacagaacattt ctaagtcacacatggaaacctgccagtacttgagggaggagctgcaacagatcacctggcaaacgtttctgcaggaagaa attgagaactatcagagcaagcaaagagagatcatgtggcagttgtgtgcggtgaagataacggaagcaatacagtatgt cgtagagtttgccaaacgcatcgacggctttatggaactatgccaaaacgatcaaattgtgcttttaaaagcagggtctt tagaggttgtatttatcagaatgtgtcgtgcctttgactctcaaaacaacacagtatacttcgatggcaaatacgctggc ccagatgtattcaaatcattaggctgtgaagatttcattagttttgtttttgaatttggaaagagtttatgttctatgca ccttactgaagacgagattgcattattctcagctttcgttttactatctgcagatcgatcgtggcttcaggaaaaggtaa aaatagaaaagctccagcaaaaaattcagtttgcgcttcaacatgtactgcagaaaaaccatcgagaagatggaatatta acaaagctaatatgcaaagtgtctaccttaagagccctgtgtggacgacatacagaaaagctcatggcgttcagagcaat atacccagacattgtacgacttcattttcctcctttgtacaaggagttgttcacttcagaatttgagccgacggtgcaga tggaagggtttgccattcggtgcaacctgcagagtctggcggtattcagcagcattaaacataaaggaaaaaagcagtgt ttattatattgaagttattaattaaactgtctgctgggaggaggccaaaatgattaaatggttgtagctgtcatgattga |
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Protein
| Protein ID | habu1_s878_g03125.t1 |
|---|---|
| Definition | - |
>habu1_s878_g03125.t1 MITLSVLSNQPAFTAIHSISLTKKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLID RTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQQRDHQQPPGEAEPLTPSYSITANGLTDLH DDLSNYIDGHPPEEHLAQNISKSHMETCQYLREELQQITWQTFLQEEIENYQSKQREIMWQLCAVKITEAIQYVVEFAKR IDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYAGPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEI ALFSAFVLLSADRSWLQEKVKIEKLQQKIQFALQHVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFRAIYPDIVR LHFPPLYKELFTSEFEPTVQMEGFAIRCNLQSLAVFSSIKHKGKKQCLLY |
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| Protein ID | habu1_s878_g03125.t2 |
| Definition | - |
>habu1_s878_g03125.t2 MITLSVLSNQPAFTAIHSISLTKKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLID RTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQQRDHQQPPGEAEPLTPSYSITANGLTDLH DDLSNYIDGHPPEGSKADSAVSSFYLDIQPSPDQSGLDINGIKPEPICDYTPTTGFFPYCSFTNGETSPTVSMAELEHLA QNISKSHMETCQYLREELQQITWQTFLQEEIENYQSKQREIMWQLCAVKITEAIQYVVEFAKRIDGFMELCQNDQIVLLK AGSLEVVFIRMCRAFDSQNNTVYFDGKYAGPDVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLLSADRSWLQ EKVKIEKLQQKIQFALQHVLQKNHREDGILTKLICKVSTLRALCGRHTEKLMAFRAIYPDIVRLHFPPLYKELFTSEFEP TVQMEGFAIRCNLQSLAVFSSIKHKGKKQCLLY |
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