Gene
| Gene Model ID | habu1_s878_g03139 |
|---|---|
| Locus | habu1_scaffold878 : 1429483 ... 1438801 : + |
| To GenomeBrowser | habu1_scaffold878:1429483..1438801 |
| Genes list of scaffold | habu1_scaffold878 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable threonine--trna ligase cytoplasmic-like isoform x1 | EC:6.1.1.3 GO:0004829 GO:0005524 GO:0005737 GO:0006435 GO:0006544 GO:0006563 GO:0006566 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s878_g03139.t1 | 1 | 1 | tRNA_SAD | 118 | 166 | 3.1e-13 | 49.3 | 1.2e-16 | 6.1e-13 | 48.4 |
| habu1_s878_g03139.t1 | 1 | 1 | tRNA-synt_2b | 221 | 383 | 3.69943e-43 | 147.1 | 0.0 | 6.89439e-43 | 146.2 |
| habu1_s878_g03139.t1 | 1 | 1 | HGTP_anticodon | 488 | 542 | 5.1e-08 | 32.7 | 2.0e-11 | 1.0e-07 | 31.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s878_g03139.t1 | gi|602635438|ref|XP_007424585.1| | PREDICTED: probable threonine--tRNA ligase 2, cytoplasmic-like isoform X1 [Python bivittatus] | 0.0 |
| habu1_s878_g03139.t1 | gi|602635440|ref|XP_007424586.1| | PREDICTED: probable threonine--tRNA ligase 2, cytoplasmic-like isoform X2 [Python bivittatus] | 0.0 |
| habu1_s878_g03139.t1 | gi|637361469|ref|XP_008120289.1| | PREDICTED: LOW QUALITY PROTEIN: probable threonine--tRNA ligase 2, cytoplasmic [Anolis carolinensis] | 0.0 |
| habu1_s878_g03139.t1 | gi|530582378|ref|XP_005285035.1| | PREDICTED: probable threonine--tRNA ligase 2, cytoplasmic [Chrysemys picta bellii] | 0.0 |
| habu1_s878_g03139.t1 | gi|564259900|ref|XP_006268868.1| | PREDICTED: probable threonine--tRNA ligase 2, cytoplasmic-like [Alligator mississippiensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 8.0 |
| Venom grand-1 | 2.7 |
| Pit, infrared sensing | 4.8 |
| Nose | 3.5 |
| Brain-1 | 11.2 |
| Eye | 9.2 |
| fetal fibroblast | 10.3 |
| venom gland-2 | 3.8 |
| Brain-2 | 11.2 |
| Spleen | 5.2 |
| Lung | 6.8 |
| Liver | 12.9 |
| Kidney | 8.4 |
| Pancreas | 7.1 |
| Small intestine | 3.5 |
| Large intestine | 6.8 |
| Stomach | 5.7 |
| heart | 9.6 |
| ovary | 13.1 |
| cheek muscle | 5.3 |
Transcript
| Transcript ID | habu1_s878_g03139.t1 |
|---|---|
| Definition | - |
>habu1_s878_g03139.t1 acgagaagctgcgctaccgtctccaccacctccgccgcagcctcgccgccgagcagggccgccaggaccttctggagaca aagactgaagacaccccgagaaagcaggaaaaggagcagaagacgcagccccaagctgcagagggggggccagaagaaga tccgaccttcatctggagcagactggagctctacgaagagctgaaaaaagagagcgatgcgcttctgcagtccagagcat ctggccagagtcagacaatccaaatcacgctttccgatgggaaggtgatgggcggacaggcctggaagacaacgccacac caggtggctgtcgacctcagctggggagttgctgacagtgtcgtcattgccagagtgaacggggaattgtgggaccttga ccggccgatggaaggagattccaccttggagctgctgacatttgagaatgaagatgcccaggcggtttattggcattcca gtgcccacattctgggtgaagccatggaaaattattatgggggatgcttatgttatggaccccctattgagaatggcttc tattatgacatgcacatggaaaacagaggggtttccagtacagagttactcactctggagaacatttgcaaaagcatcat caaggagaaacagccctttgaaaggctcgaagtccgaaaagaagatttgctggaaatgtttaaatataacaagtttaaat gtcggatcctgaatgagaaaatccacacaccgaccacaactgtatacaggtgcggtcccttgattgatttatgcaaaggt ccccatgtgagacatactggaaaaataaaagccttaaagataattaagaattcgtcgacctattgggaggggaagtccaa catggaaactttgcaacggatctacggaatctctttcccagaggccaaaatgatgaaggagtgggaaaaattccatgagg aagccaaaaaacgggatcacaggaaaatcggcaaggaacaagaactcttctttttccatgatctgagccctggaagttgt ttctttcttccccgaggagcttttatttacaacaccctcgtggaattcatcaaagaagagtatcagcggcggaacttcat ggaagtcgtttcgcccaatatctacaacagtaaactttgggaaacctctggccactggcagcattacagcgaaaacatgt tctcatttgaggcggaaaaagaagtctttgcgctgaagcccatgaactgtcctggacattgcctgatgtttgctcatcgt cctcggtcttggagggagatgcctctgagactggctgattttggggtgcttcaccgtaacgaactttcggggacccttgg tggtctgacgcgggtccgacgcttccaacaagacgatgcccacctcttctgcacaatggagcagatcgaggaggagatga aaggatgcctccatttcctgcaatccgtgtatgccgtcttcgggttcaccttccagttacatctttccaccagacccagc aacttcctaggggagaaggagatctgggatcaggcggagaagcaacttcagaacagcttggatgactttggggaaccttg gaaactcaatccaggtgatggagcgttttacgggcccaagattgacattacaatcaaggatgctatcggccgataccacc aatgtgctacaatccagctggacttccagctaccgctccggtttaatctgacttatgctggaaaagacggcaatgacaag acgaggcccgtgatcatccaccgagcaattctgggctccgtggagcggatgatggctatcctggcagaaaactacagtgg aaaatggcctttttggctctcccctcagcaagtcatggtggttcccgttggccccacctgcgaagaatatgcccgccagg tctgcagtgcagcttctgaagctggacttatggctgatgttgatttggatcagagctccacgttgaataggaaaataagg aatgcacagctggctcagtataatttcatttttggtatctatgctatccgcttttaacgttaacccggctctccctttgt tcaagagtggaagctccttcagccttgcgccacgtccggcctctgctggctggaaggggtagaattctttgctcatttga gagccaagaataaccttagggtttcctgcctgagcagggggttggactagaagacctccaaggtcccttccaactcttta ttattattgttattgttattattggattaggaagagttatgtgaataaatcttattccccactatacaaga |
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Protein
| Protein ID | habu1_s878_g03139.t1 |
|---|---|
| Definition | - |
>habu1_s878_g03139.t1 MEGDSTLELLTFENEDAQAVYWHSSAHILGEAMENYYGGCLCYGPPIENGFYYDMHMENRGVSSTELLTLENICKSIIKE KQPFERLEVRKEDLLEMFKYNKFKCRILNEKIHTPTTTVYRCGPLIDLCKGPHVRHTGKIKALKIIKNSSTYWEGKSNME TLQRIYGISFPEAKMMKEWEKFHEEAKKRDHRKIGKEQELFFFHDLSPGSCFFLPRGAFIYNTLVEFIKEEYQRRNFMEV VSPNIYNSKLWETSGHWQHYSENMFSFEAEKEVFALKPMNCPGHCLMFAHRPRSWREMPLRLADFGVLHRNELSGTLGGL TRVRRFQQDDAHLFCTMEQIEEEMKGCLHFLQSVYAVFGFTFQLHLSTRPSNFLGEKEIWDQAEKQLQNSLDDFGEPWKL NPGDGAFYGPKIDITIKDAIGRYHQCATIQLDFQLPLRFNLTYAGKDGNDKTRPVIIHRAILGSVERMMAILAENYSGKW PFWLSPQQVMVVPVGPTCEEYARQVCSAASEAGLMADVDLDQSSTLNRKIRNAQLAQYNFIFGIYAIRF |
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