Gene
| Gene Model ID | habu1_s878_g03143 |
|---|---|
| Locus | habu1_scaffold878 : 1461533 ... 1486567 : + |
| To GenomeBrowser | habu1_scaffold878:1461533..1486567 |
| Genes list of scaffold | habu1_scaffold878 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s878_g03143.t1 | 4 | 1 | LRR_4 | 176 | 216 | 1.6e-17 | 62.6 | 6.0e-10 | 1.5e-06 | 27.6 |
| habu1_s878_g03143.t1 | 3 | 1 | LRR_8 | 176 | 229 | 3.2e-11 | 42.8 | 1.3e-06 | 0.0032 | 17.2 |
| habu1_s878_g03143.t1 | 4 | 2 | LRR_4 | 199 | 229 | 1.6e-17 | 62.6 | 1.4e-09 | 3.5e-06 | 26.4 |
| habu1_s878_g03143.t1 | 4 | 3 | LRR_4 | 247 | 276 | 1.6e-17 | 62.6 | 4.3e-06 | 0.011 | 15.3 |
| habu1_s878_g03143.t1 | 1 | 1 | LRR_9 | 251 | 371 | 9.4e-14 | 51.3 | 2.0e-13 | 4.9e-10 | 39.2 |
| habu1_s878_g03143.t1 | 3 | 2 | LRR_8 | 252 | 289 | 3.2e-11 | 42.8 | 6.3e-07 | 0.0016 | 18.1 |
| habu1_s878_g03143.t1 | 4 | 4 | LRR_4 | 258 | 299 | 1.6e-17 | 62.6 | 3.5e-09 | 8.6e-06 | 25.2 |
| habu1_s878_g03143.t1 | 3 | 3 | LRR_8 | 298 | 337 | 3.2e-11 | 42.8 | 2.1e-06 | 0.0051 | 16.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s878_g03143.t1 | gi|602658088|ref|XP_007434752.1| | PREDICTED: leucine-rich repeat-containing protein 49 [Python bivittatus] | 0.0 |
| habu1_s878_g03143.t1 | gi|637353832|ref|XP_008118847.1| | PREDICTED: leucine-rich repeat-containing protein 49 [Anolis carolinensis] | 0.0 |
| habu1_s878_g03143.t1 | gi|530582357|ref|XP_005285025.1| | PREDICTED: leucine-rich repeat-containing protein 49 [Chrysemys picta bellii] | 0.0 |
| habu1_s878_g03143.t1 | gi|558225336|ref|XP_006136949.1| | PREDICTED: leucine-rich repeat-containing protein 49, partial [Pelodiscus sinensis] | 0.0 |
| habu1_s878_g03143.t1 | gi|591363149|ref|XP_007056479.1| | PREDICTED: leucine-rich repeat-containing protein 49 [Chelonia mydas] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 5.4 |
| Venom grand-1 | 5.2 |
| Pit, infrared sensing | 5.4 |
| Nose | 11.6 |
| Brain-1 | 5.9 |
| Eye | 4.6 |
| fetal fibroblast | 5.5 |
| venom gland-2 | 8.1 |
| Brain-2 | 9.5 |
| Spleen | 2.7 |
| Lung | 3.2 |
| Liver | 1.8 |
| Kidney | 3.1 |
| Pancreas | 1.7 |
| Small intestine | 1.5 |
| Large intestine | 2.8 |
| Stomach | 1.7 |
| heart | 2.2 |
| ovary | 14.4 |
| cheek muscle | 3.8 |
Transcript
| Transcript ID | habu1_s878_g03143.t1 |
|---|---|
| Definition | - |
>habu1_s878_g03143.t1 gcgagaggaggcggaggcggcggcggccacttccgcgctttgttgtggcggcggcggcgggagtggttgtcatggtgccc agcaaatgccggcccgccggggtaggaaggccgggccacaccgtctcggccaacaattacggagttcagctggttctcca aagtacgtcgtcggcagaaagaaccagagctctggagctgagattgcacaaagaacagccctatctccataaccggttct tgcagcatgaccttgaaaaaaaccaccccggaaaactagatggaagattaagtcctttgtcacgcagtaaaaaagtctgc atccccatcgcagctaattttgctgatatccctagtttggaagtgaaatacggcccgggttctctcacagtctgtggaga cggctcttttccgaatcctttgaagtaccgaattcagcaggactgccataatgtcagtgcaaatagcccagatatttata gggacacaggatttcctttggtgtaccgctcggcagaagagaaaatccagctttcagaccggatgaccctcgaaaggcag aagctgaccgtttgccccatcattgacggggaagagcaccttcggctcctgagcttccagcacaacttcatcactcgaat ccagaacatctccaacttgcagcacctgatcttcttagacttgtacgataaccagatcgaagaaatcagcggcctttcta ctctgaggtgtctccgggtcctgtcgctgggaaataacagcaaagaggatgagaagaggacttggaagcctccaactgcc accagtctaataaggaggatttcaaacttggataatcttgtaaaccttgatgtcttggatcttcatggcaatcagatttc cctcatagaaaacctgagtcacttacgagatctccgaatgttgaacctggcgcgaaattgcttgacccacaaagatgtgg acagcctgcccagcctgcagcgtctcttcctcagcttcaacaacgtctcttgtgtggaagacatcctgtgcctggcagac tcggcctctatttcagaactcaccctagatggcaaccccatagcgcaggaggcatgttacaagccgaccattctccatca tatgatgcagctccgacagctggatatgaaaaaaatcacagaagaagaacggcgcctggcatccgttgccctacgaaaag aggaagagaagaggcgtgaaagtcacaggcagactttgttaaaggagaagaaacggttaaccatctgcaacatcgcccat cactgggaaatccagcagaaccgtctcgtcctgaaggtttcgaaccaggagccggtccaaggcgaggagccctgtcagaa caacaggaatgtggcttgtgaatttcctgaggagggcaggtctctggagacccttttaggcaaagttgtgccaggtctgg agtctcacctggtggaaatagacggcgacactctctgcctgtatggttccggagctctggaatccctggaccggaattgg agcgttcagacgactggaaacatcgctaccatctcttttattttcatagactttgatgaaattatcccagtgctatcgaa actgaagatcaagttccccaattttctgcacttgaagttcaaggagaccaacctgacgatgttgcagcagttcaacgcct tagctcacctgcgtcggctcgagcagttaacagttgagactcagggaaacccggtggttaccttcaccttgtggaagttt tacgttctgttcaggctgaaccattttaacctgcaaaagatcaacggattagaggttacccagaatgacgtgatcatggc tgaaagactgtttgggatcttggcctacgtggcatcttccaacatgccccactaccggctgatctcgctgctgggagatt gcaggaagaaacaattgtgttttcttttggaggccaaaggaaagaaattcgggaccgcaggtgacaatggcaacaaccgc cggaagcttgaaggagaaaacagcacccgatccacgctgacttatatttcagggggtttacagacagaaaagcaggagga actgaaggagaagaagaacttctgccaaagctacatccaagagttggtgaaggaagccaccgacatccatatgaaatacg agtccttgcagaagttctggcctcagatgttcgtcgagctggtccgggacgccgtgatcgagatgcaccacaaggattcc taccggaggcactgcttgcaaggcctggctgagcaaaaactgtgacttcacctgtcagtattcctcagctgggtttttct tgttcccaccaaggcccccagcggtctctatcgtggccatccttctgagacccttttgaatgccttgtcttgaaaaaacc tcattttcctagcaaaatactctcttttcctacttttacatgagatggcttttatttatttatttttttgttttgttttc ccacattctaatgtacatgagcattggctcaatacggagataggcagaccacacaattttattttattttttttcctgag gccaaaggatcctcattttcttgcacttttttccccttctttttgctggtgctgtaactctttgcatgttcttcaagcac tacttgaaatgaaataagacctggagttccctcgttcaatcctgaaccgtttcttatttttattcttatttttattttta ttatttccctggtgctattgctgctgcgggtggcggcgatagcagcagaaacgttgcagatgaaaacactggatttttga ggattggaaattaataaactattctgttgacaactctcaa |
|
Protein
| Protein ID | habu1_s878_g03143.t1 |
|---|---|
| Definition | - |
>habu1_s878_g03143.t1 MVPSKCRPAGVGRPGHTVSANNYGVQLVLQSTSSAERTRALELRLHKEQPYLHNRFLQHDLEKNHPGKLDGRLSPLSRSK KVCIPIAANFADIPSLEVKYGPGSLTVCGDGSFPNPLKYRIQQDCHNVSANSPDIYRDTGFPLVYRSAEEKIQLSDRMTL ERQKLTVCPIIDGEEHLRLLSFQHNFITRIQNISNLQHLIFLDLYDNQIEEISGLSTLRCLRVLSLGNNSKEDEKRTWKP PTATSLIRRISNLDNLVNLDVLDLHGNQISLIENLSHLRDLRMLNLARNCLTHKDVDSLPSLQRLFLSFNNVSCVEDILC LADSASISELTLDGNPIAQEACYKPTILHHMMQLRQLDMKKITEEERRLASVALRKEEEKRRESHRQTLLKEKKRLTICN IAHHWEIQQNRLVLKVSNQEPVQGEEPCQNNRNVACEFPEEGRSLETLLGKVVPGLESHLVEIDGDTLCLYGSGALESLD RNWSVQTTGNIATISFIFIDFDEIIPVLSKLKIKFPNFLHLKFKETNLTMLQQFNALAHLRRLEQLTVETQGNPVVTFTL WKFYVLFRLNHFNLQKINGLEVTQNDVIMAERLFGILAYVASSNMPHYRLISLLGDCRKKQLCFLLEAKGKKFGTAGDNG NNRRKLEGENSTRSTLTYISGGLQTEKQEELKEKKNFCQSYIQELVKEATDIHMKYESLQKFWPQMFVELVRDAVIEMHH KDSYRRHCLQGLAEQKL |
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