Gene
| Gene Model ID | habu1_s878_g03144 |
|---|---|
| Locus | habu1_scaffold878 : 1501193 ... 1624199 : + |
| To GenomeBrowser | habu1_scaffold878:1501193..1624199 |
| Genes list of scaffold | habu1_scaffold878 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| thrombospondin type-1 domain-containing protein 4 | EC:3.4.24.0 GO:0001527 GO:0004222 GO:0006508 GO:0048251 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s878_g03144.t2 | 5 | 1 | TSP_1 | 58 | 80 | 2.3e-27 | 94.8 | 4.6e-07 | 0.0023 | 18.0 |
| habu1_s878_g03144.t2 | 1 | 1 | ADAM_spacer1 | 437 | 552 | 6.4e-35 | 119.4 | 2.0e-38 | 9.8e-35 | 118.8 |
| habu1_s878_g03144.t2 | 5 | 2 | TSP_1 | 692 | 723 | 2.3e-27 | 94.8 | 2.7e-09 | 1.3e-05 | 25.1 |
| habu1_s878_g03144.t2 | 5 | 3 | TSP_1 | 752 | 802 | 2.3e-27 | 94.8 | 7.9e-11 | 3.9e-07 | 30.0 |
| habu1_s878_g03144.t2 | 5 | 4 | TSP_1 | 868 | 921 | 2.3e-27 | 94.8 | 1.0e-07 | 0.00051 | 20.0 |
| habu1_s878_g03144.t2 | 5 | 5 | TSP_1 | 928 | 976 | 2.3e-27 | 94.8 | 3.5e-09 | 1.8e-05 | 24.7 |
| habu1_s878_g03144.t2 | 1 | 1 | PLAC | 983 | 1015 | 3.4e-09 | 36.8 | 6.8e-13 | 3.4e-09 | 36.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s878_g03144.t2 | gi|530582355|ref|XP_005285024.1| | PREDICTED: thrombospondin type-1 domain-containing protein 4 isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s878_g03144.t2 | gi|701377420|ref|XP_009992707.1| | PREDICTED: thrombospondin type-1 domain-containing protein 4 isoform X1 [Chaetura pelagica] | 0.0 |
| habu1_s878_g03144.t2 | gi|686604410|ref|XP_009278615.1| | PREDICTED: thrombospondin type-1 domain-containing protein 4 isoform X1 [Aptenodytes forsteri] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 3.7 |
| Venom grand-1 | 4.6 |
| Pit, infrared sensing | 4.3 |
| Nose | 2.5 |
| Brain-1 | 6.2 |
| Eye | 4.9 |
| fetal fibroblast | 3.7 |
| venom gland-2 | 3.0 |
| Brain-2 | 2.6 |
| Spleen | 0.9 |
| Lung | 5.9 |
| Liver | 0.7 |
| Kidney | 0.6 |
| Pancreas | 0.9 |
| Small intestine | 0.4 |
| Large intestine | 2.1 |
| Stomach | 1.8 |
| heart | 0.7 |
| ovary | 0.3 |
| cheek muscle | 0.4 |
Transcript
| Transcript ID | habu1_s878_g03144.t1 |
|---|---|
| Definition | - |
>habu1_s878_g03144.t1 aaaggaaacagattctggctttgaagggagttaaagtgtggggcgatgatgcttaccagctacctgctcttggggatgct ctgcttccaagccgcgacgtcagcgacccccaaagacaagagtattggctgtgatgactacctgggttccgataaggtgg tggacaaatgtggaatctgtggaggggacaacacagcttgcagggtgatctcaggagtcttcaagcacagcctgaccaac cttggctaccacaaactagtagaaattccagaaggggccaccaaaatcaacatcacagagatgtccaagagcaacaatta cctggcactacggagtcgatcaggacgtgccattatcaacgggaattgggcaattgatcgacctgggagatacgagggag gaggaacgatattcatctataaacggcccaacgagatctcaagtactgccggggaatcctttttagcagagggcccaacc aatgaaatcttggatgtctatatgattcatcaacagcccaatccaggtatacattatgagtacattattccaggtcccaa caccatcagttctcaggtgcctcttcacagacggccaggggagccgttcaatggccaactggcggtgacagagaccgtga attacgaggacaaagatctgcatcaggaggcaggcaatcacccgagacaacccgggatgagtcagcctggaagatttcct tcccaagttccagacaaccaagtcccagtcggtcagcctcccagacgcagccgggaacataactggaaacaaactggaac aactgaatgcagcgctacctgtgggaaaggggcgcaatatcccatcttccgctgcgtgcacagaaacactcacgaggagg cggctgacagctactgcgacgtcaactctaagcccaccccggaggaggaaccctgcaaccttttcccttgcccagccttc tgggatttaggagagtggtcagaatgcagcaaatcctgcggcctggggatgcagcatcgtcaagttctctgccggcaagt ctatgccaaccgcaccttaacggttcagctgcatcgatgccaacacctggagaaaccagagacgacaagtacgtgccaac tgaagatctgcagtgaatggcaaattcggacagaatggacatcgtgctcggttccatgtggagttggccagaagacccgg gatgtaaaatgcgtcagcaaccttggggacgttgttgatgatgaggagtgtaacatgaagctgcggccaaatgacattga gaattgtgatatggggccttgtgccaagagctggttccttacggaatggagtgatcggtgctcggcagaatgtggttctg gcgttcgaacccgttccgtggtctgcatgaccaaccacatcagcagtttgccactggagggttgtgggcacaacagaccc ttggaaagtaccccctgtgacaacgggccttgcctggggaaagtcgagtggtttgctggcagctggagtcagtgttccat cgagtgtggcagtggcacccagcagagggaggtcgtctgtatccggaagaccgagaaccactttgagatgctgaatcccc acgagtgcgccttcctgcaaagaccccccagccagcagacctgcaacctcaaaccttgtggtgccaagtggttcagtacc gaatggagcgcttgttccaagtcgtgcgaaggcggcttccgaatccgggaggtgcgatgtctgtcagatgacatgtcccc aagtaccaaatgtgactcccagctgaagctggtggaaaaggaatcctgcaacacccaggactgcatgcctgacatagatg aaaactgcaaagataaatactacaactgcaacgttgtggtgcaagcccgcctctgcgtctacacctattacaagacggcc tgctgcatatcctgttccagagtggcgaatcgccagtcgggctttttggggaggcgataacagctgctccatccctggct tctgacctgtgccctagctcccgcaagctgctttcacaacacttctacctttccaagagtggttcttttccccccataat gatgggcacctctgaaggggtgatggaagcacctctgggggaatatcactaacacacactgtaataaaaatgttggggaa acccatgctg |
|
| Transcript ID | habu1_s878_g03144.t2 |
| Definition | - |
>habu1_s878_g03144.t2 gaccttctgacaggcaaagtcaatggggaagccggattcacttaaccattgaggatttttctataattcctccccccacc cccatttcaacaaattggcaaccaacctttggctctcctgcacaccattttcggagtcaagaactatgctagacaatttt aaagggtctttgaggattctgagttccctagtcgtgtttggatttcagctggtcattccacagacttccattgaacacag aaaggtaccccaaaggataaaagatgggaatgttgccccagaagaagagaacggaggaatccctggggtctggggcagct ggggaccttggtcagcttgctccagaagctgcagtggtggagtgatggtgcagatgcggccatgtcttccaggatactac tatgagaggacttctcacaagcctgggcagttctctgcttcagagagggcactggctcatatccagcaactgcctcaaga agactctctgcctcctttctctggtcacgtcatctcagccatccgtacatcggttcctcttcacaggaatgaggaaccac cacgagctgctctctcctctggagggggccgcaatgacagccattggagccgagccacctcaaaagggggtcaagttcct cagtctcggagacgtagccccaaatcagaaagaagaggccgaaataaaagccccattggacctgggaaatatggctacgg aaaagttccttatatcctcccgctgcagacggacacgggacaatcggcacacaaaccccgcaagcaacgtcagtccatgc agcctgcaccaaaccaacagatgactggtggcatctccacttttgcccatccaggtagcccttcccatcatcatcctgga ggaacctaccaaggtgaccaccaatcttctccagccaggtctcaggttgcgagcagctctttctatcaacaaccagggtc ccattttcaatccttcccggcagcatctcgaagtttgttccagggcacagaacggggcaggcatctccctggagtgtctt atccacccgtccaagggcagatgtctgctcagccggccgctgcaattgtgtgcaccggggcctacaagcagtacagactc tgcaatacgaacgcctgccttgagaacagaaacatcagagaggtgcaatgtgcatcgtacaacaacaagccatttatggg ccgtttctacgagtgggagccatttgctgaagtgaagggcagtcagaaatgtgagctcaactgccgagcggtcggctatc gcttctacgtgaggcaggcagagaaagtcattgacgggacaccatgcgatcaaaatggaacctccgtctgcgtgtcgggg caatgcaagagtattggctgtgatgactacctgggttccgataaggtggtggacaaatgtggaatctgtggaggggacaa cacagcttgcagggtgatctcaggagtcttcaagcacagcctgaccaaccttggctaccacaaactagtagaaattccag aaggggccaccaaaatcaacatcacagagatgtccaagagcaacaattacctggcactacggagtcgatcaggacgtgcc attatcaacgggaattgggcaattgatcgacctgggagatacgagggaggaggaacgatattcatctataaacggcccaa cgagatctcaagtactgccggggaatcctttttagcagagggcccaaccaatgaaatcttggatgtctatatgattcatc aacagcccaatccaggtatacattatgagtacattattccaggtcccaacaccatcagttctcaggtgcctcttcacaga cggccaggggagccgttcaatggccaactggcggtgacagagaccgtgaattacgaggacaaagatctgcatcaggaggc aggcaatcacccgagacaacccgggatgagtcagcctggaagatttccttcccaagttccagacaaccaagtcccagtcg gtcagcctcccagacgcagccgggaacataactggaaacaaactggaacaactgaatgcagcgctacctgtgggaaaggg gcgcaatatcccatcttccgctgcgtgcacagaaacactcacgaggaggcggctgacagctactgcgacgtcaactctaa gcccaccccggaggaggaaccctgcaaccttttcccttgcccagccttctgggatttaggagagtggtcagaatgcagca aatcctgcggcctggggatgcagcatcgtcaagttctctgccggcaagtctatgccaaccgcaccttaacggttcagctg catcgatgccaacacctggagaaaccagagacgacaagtacgtgccaactgaagatctgcagtgaatggcaaattcggac agaatggacatcgtgctcggttccatgtggagttggccagaagacccgggatgtaaaatgcgtcagcaaccttggggacg ttgttgatgatgaggagtgtaacatgaagctgcggccaaatgacattgagaattgtgatatggggccttgtgccaagagc tggttccttacggaatggagtgatcggtgctcggcagaatgtggttctggcgttcgaacccgttccgtggtctgcatgac caaccacatcagcagtttgccactggagggttgtgggcacaacagacccttggaaagtaccccctgtgacaacgggcctt gcctggggaaagtcgagtggtttgctggcagctggagtcagtgttccatcgagtgtggcagtggcacccagcagagggag gtcgtctgtatccggaagaccgagaaccactttgagatgctgaatccccacgagtgcgccttcctgcaaagaccccccag ccagcagacctgcaacctcaaaccttgtggtgccaagtggttcagtaccgaatggagcgcttgttccaagtcgtgcgaag gcggcttccgaatccgggaggtgcgatgtctgtcagatgacatgtccccaagtaccaaatgtgactcccagctgaagctg gtggaaaaggaatcctgcaacacccaggactgcatgcctgacatagatgaaaactgcaaagataaatactacaactgcaa cgttgtggtgcaagcccgcctctgcgtctacacctattacaagacggcctgctgcatatcctgttccagagtggcgaatc gccagtcgggctttttggggaggcgataacagctgctccatccctggcttctgacctgtgccctagctcccgcaagctgc tttcacaacacttctacctttccaagagtggttcttttccccccataatgatgggcacctctgaaggggtgatggaagca cctctgggggaatatcactaacacacactgtaataaaaatgttggggaaacccatgctg |
|
Protein
| Protein ID | habu1_s878_g03144.t1 |
|---|---|
| Definition | - |
>habu1_s878_g03144.t1 MLCFQAATSATPKDKSIGCDDYLGSDKVVDKCGICGGDNTACRVISGVFKHSLTNLGYHKLVEIPEGATKINITEMSKSN NYLALRSRSGRAIINGNWAIDRPGRYEGGGTIFIYKRPNEISSTAGESFLAEGPTNEILDVYMIHQQPNPGIHYEYIIPG PNTISSQVPLHRRPGEPFNGQLAVTETVNYEDKDLHQEAGNHPRQPGMSQPGRFPSQVPDNQVPVGQPPRRSREHNWKQT GTTECSATCGKGAQYPIFRCVHRNTHEEAADSYCDVNSKPTPEEEPCNLFPCPAFWDLGEWSECSKSCGLGMQHRQVLCR QVYANRTLTVQLHRCQHLEKPETTSTCQLKICSEWQIRTEWTSCSVPCGVGQKTRDVKCVSNLGDVVDDEECNMKLRPND IENCDMGPCAKSWFLTEWSDRCSAECGSGVRTRSVVCMTNHISSLPLEGCGHNRPLESTPCDNGPCLGKVEWFAGSWSQC SIECGSGTQQREVVCIRKTENHFEMLNPHECAFLQRPPSQQTCNLKPCGAKWFSTEWSACSKSCEGGFRIREVRCLSDDM SPSTKCDSQLKLVEKESCNTQDCMPDIDENCKDKYYNCNVVVQARLCVYTYYKTACCISCSRVANRQSGFLGRR |
|
| Protein ID | habu1_s878_g03144.t2 |
| Definition | - |
>habu1_s878_g03144.t2 MLDNFKGSLRILSSLVVFGFQLVIPQTSIEHRKVPQRIKDGNVAPEEENGGIPGVWGSWGPWSACSRSCSGGVMVQMRPC LPGYYYERTSHKPGQFSASERALAHIQQLPQEDSLPPFSGHVISAIRTSVPLHRNEEPPRAALSSGGGRNDSHWSRATSK GGQVPQSRRRSPKSERRGRNKSPIGPGKYGYGKVPYILPLQTDTGQSAHKPRKQRQSMQPAPNQQMTGGISTFAHPGSPS HHHPGGTYQGDHQSSPARSQVASSSFYQQPGSHFQSFPAASRSLFQGTERGRHLPGVSYPPVQGQMSAQPAAAIVCTGAY KQYRLCNTNACLENRNIREVQCASYNNKPFMGRFYEWEPFAEVKGSQKCELNCRAVGYRFYVRQAEKVIDGTPCDQNGTS VCVSGQCKSIGCDDYLGSDKVVDKCGICGGDNTACRVISGVFKHSLTNLGYHKLVEIPEGATKINITEMSKSNNYLALRS RSGRAIINGNWAIDRPGRYEGGGTIFIYKRPNEISSTAGESFLAEGPTNEILDVYMIHQQPNPGIHYEYIIPGPNTISSQ VPLHRRPGEPFNGQLAVTETVNYEDKDLHQEAGNHPRQPGMSQPGRFPSQVPDNQVPVGQPPRRSREHNWKQTGTTECSA TCGKGAQYPIFRCVHRNTHEEAADSYCDVNSKPTPEEEPCNLFPCPAFWDLGEWSECSKSCGLGMQHRQVLCRQVYANRT LTVQLHRCQHLEKPETTSTCQLKICSEWQIRTEWTSCSVPCGVGQKTRDVKCVSNLGDVVDDEECNMKLRPNDIENCDMG PCAKSWFLTEWSDRCSAECGSGVRTRSVVCMTNHISSLPLEGCGHNRPLESTPCDNGPCLGKVEWFAGSWSQCSIECGSG TQQREVVCIRKTENHFEMLNPHECAFLQRPPSQQTCNLKPCGAKWFSTEWSACSKSCEGGFRIREVRCLSDDMSPSTKCD SQLKLVEKESCNTQDCMPDIDENCKDKYYNCNVVVQARLCVYTYYKTACCISCSRVANRQSGFLGRR |
|