Gene
| Gene Model ID | habu1_s878_g03145 |
|---|---|
| Locus | habu1_scaffold878 : 1734284 ... 1791220 : - |
| To GenomeBrowser | habu1_scaffold878:1734284..1791220 |
| Genes list of scaffold | habu1_scaffold878 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| neuronal acetylcholine receptor subunit alpha-7-like | GO:0004889 GO:0007165 GO:0016021 GO:0045211 GO:0098655 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s878_g03145.t1 | 1 | 1 | V-set | 45 | 158 | 8.6e-08 | 32.0 | 8.5e-11 | 2.1e-07 | 30.8 |
| habu1_s878_g03145.t1 | 1 | 1 | Neur_chan_LBD | 260 | 463 | 0.0 | 245.9 | 0.0 | 0.0 | 245.3 |
| habu1_s878_g03145.t1 | 1 | 1 | Neur_chan_memb | 470 | 718 | 0.0 | 203.3 | 0.0 | 0.0 | 202.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s878_g03145.t1 | gi|719770670|ref|XP_010219123.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-7 [Tinamus guttatus] | 0.0 |
| habu1_s878_g03145.t1 | gi|602667796|ref|XP_007439456.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-7-like [Python bivittatus] | 0.0 |
| habu1_s878_g03145.t1 | gi|543256649|ref|XP_005419815.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-7-like [Geospiza fortis] | 0.0 |
| habu1_s878_g03145.t1 | gi|557279014|ref|XP_006022556.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-7-like [Alligator sinensis] | 0.0 |
| habu1_s878_g03145.t1 | gi|669263071|ref|XP_008636192.1| | PREDICTED: CHRNA7-FAM7A fusion protein [Corvus brachyrhynchos] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.0 |
| Venom grand-1 | 0.0 |
| Pit, infrared sensing | 0.1 |
| Nose | 0.1 |
| Brain-1 | 7.1 |
| Eye | 1.3 |
| fetal fibroblast | 0.0 |
| venom gland-2 | 0.0 |
| Brain-2 | 7.0 |
| Spleen | 4.8 |
| Lung | 0.0 |
| Liver | 0.1 |
| Kidney | 0.1 |
| Pancreas | 0.8 |
| Small intestine | 0.2 |
| Large intestine | 0.3 |
| Stomach | 0.1 |
| heart | 0.1 |
| ovary | 0.1 |
| cheek muscle | 0.0 |
Transcript
| Transcript ID | habu1_s878_g03145.t1 |
|---|---|
| Definition | - |
>habu1_s878_g03145.t1 ctgactctcctgtggctcagagaagctgcaggtgccacttttttttaccaatataaaactgcaaatgtgactcaaatctg caacaaatccttgggggaaaacaatgctacttggtggtttggacagcacaaaagctccctgcaaaaatttgagcgggggt gctgcaatcaaaataagtcacaaaaatgtaagcgtgaaaactgccacaacgaacttcacctgggcgatttctcctctggg ggaatttttgcctgcagaagcctgatggggcgcccgatcctggaaaaccaaaaccctgtatttacttcgaaaaatgactg cacaaatttcaatttctttattatagcaataataaacagcacagcagagcagagttctgaaaacattcgtgggaaatcag aggaaaatgtgtccattgagcaaaaagaaaacttcactctttcctgtgagtttgaactgacaacggacacaaccacgttt gctgtgtattggtttaaggaaaccgaaccaagcagctgcctcttttcggcttcaaatgaagaccatcacaatctcgttag cttctcctacgatgtcaactgttgcattgatgaggcattcagaggccgacgaatcaattcctccaaaacgtcaggtgtgc aaggtcaaaagcagacacacatagttacaatcagcaacagcaccggggccgacagtgcgagctacatttgtgtggtggcc gcttataatagaaaatacacgtggacaatagaacgcaggacatctgtgagcgtgagggaagcatcgccacgaagctcaaa actcgaactcaagatctccctagcagcaattgcagcagccacacttttgatgggtgggatcattttgttcttgtgctgca agaaaaaagtgaaaggaaagccactggaaggtgaaaaaagggaccagactacagatgctacagaagattgttctccgtat gccgtttccagccgcaacgacctggctggccctgaaacggtttattcgctagccacgatgagcctgcaaggagagtacca gcgaaaactataccgagagctgttgaagaattacaatcccttggaaaggccggtggctaatgattctcagccgctcaccg tttctttcagccttagtctccgacaaattatggatgtggatgaaaagaatcaagtattaaccacgaacgtttggctgcac atgtattggacggattattatctacaatggaacatgtctgagtatcctggagtgaagaacgttcgctttcctgctggaca gatatggaagccagatatccttctatataacagtgctgatgaacgttttgatgctactttccacacaaatgttttggtca actcttcaggatactgtcagtatcttcctccagggattttcaagagttcttgctccatcgatgtccgatggtttcctttt gatgtccagaactgtaaattgaagtttggatcctggacttacggaggctggtctcttgatctccagatgcaacaagcaga aatctctggatacatttcaaatggagagtgggatttagtgggagttccaggcaagaggacagaatccttctatgactgtt gcaaagagccctatccagatgtgacctttacaatcacaatgcgacggagaacactgtattatggacttaatcttctcatc ccatgtgtcctgatctcagcacttgcccttctggtttttctgcttccagctgactctggagagaaaatttcacttggaat cacggttttgttatccctcaccgtttttatgctcctggtggccgaaatcatgccagcgacgtcggactctgtgccattaa ttgctcaatatttcgccagcaccatgattattgtaggactttcagtggtggtgacagtcattgtcctacaatatcatcac catgatcccgaaggtggcaaaatgccaaagtggaccagaattatccttctcaactggtgtgcctggttcctgaggatgaa gaggcctggagaaggccgagtgcgcccggcttgccagcacaaacgccgctgtagcatttcaagtgtggagatcaatacag tcagcggtcagcaatccagcaatggaaatatgttatacattggcttcaggggtctggaaggtgtccactgcaccccaacc accgattccggggtgatctgcggaagaatggcttgttctcccacggatgaggagaacctccttcacaatgggcactcttc tgaaacggactcggatctagcaaagatcctcgaggagatccggtacatcgccaaccgattcagagaccaggatgaggctc aagcggtttgcaacgagtggaagtttgctgcctctgtggtggaccgcctctgtttgatggccttctcggtcttcaccatc atctgcaccatcggcatcctgatgtcggcgcccaattttgtggaggcggtttcgaaagattttgcttgacctgcgcttgg ggactgcccctaaccccaaagttggccatttctcaaaaatctgttatgtagcaataatgtatttcagggcccttgattct attgcatatgtggatgcaaactttgctttttttctttcctggggaggcagggggagggtgaaggttcaggctaaaaaaag acagtctcattattaagaacctcagtgaggtaacaagagctcctccatcagtacctggactcacagctttggtgtctgga ataaactcttttaataaagtcagcttg |
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Protein
| Protein ID | habu1_s878_g03145.t1 |
|---|---|
| Definition | - |
>habu1_s878_g03145.t1 MGRPILENQNPVFTSKNDCTNFNFFIIAIINSTAEQSSENIRGKSEENVSIEQKENFTLSCEFELTTDTTTFAVYWFKET EPSSCLFSASNEDHHNLVSFSYDVNCCIDEAFRGRRINSSKTSGVQGQKQTHIVTISNSTGADSASYICVVAAYNRKYTW TIERRTSVSVREASPRSSKLELKISLAAIAAATLLMGGIILFLCCKKKVKGKPLEGEKRDQTTDATEDCSPYAVSSRNDL AGPETVYSLATMSLQGEYQRKLYRELLKNYNPLERPVANDSQPLTVSFSLSLRQIMDVDEKNQVLTTNVWLHMYWTDYYL QWNMSEYPGVKNVRFPAGQIWKPDILLYNSADERFDATFHTNVLVNSSGYCQYLPPGIFKSSCSIDVRWFPFDVQNCKLK FGSWTYGGWSLDLQMQQAEISGYISNGEWDLVGVPGKRTESFYDCCKEPYPDVTFTITMRRRTLYYGLNLLIPCVLISAL ALLVFLLPADSGEKISLGITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIVGLSVVVTVIVLQYHHHDPEGGKM PKWTRIILLNWCAWFLRMKRPGEGRVRPACQHKRRCSISSVEINTVSGQQSSNGNMLYIGFRGLEGVHCTPTTDSGVICG RMACSPTDEENLLHNGHSSETDSDLAKILEEIRYIANRFRDQDEAQAVCNEWKFAASVVDRLCLMAFSVFTIICTIGILM SAPNFVEAVSKDFA |
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