Gene
| Gene Model ID | habu1_s878_g03153 |
|---|---|
| Locus | habu1_scaffold878 : 1879327 ... 1929860 : - |
| To GenomeBrowser | habu1_scaffold878:1879327..1929860 |
| Genes list of scaffold | habu1_scaffold878 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| paired amphipathic helix protein sin3a | EC:3.2.1.24 GO:0000122 GO:0000776 GO:0000976 GO:0001102 GO:0001103 GO:0001106 GO:0002218 GO:0002230 GO:0002244 GO:0003682 GO:0003700 GO:0004559 GO:0005667 GO:0005737 GO:0006013 GO:0006260 GO:0006476 GO:0008270 GO:0010971 GO:0016580 GO:0017053 GO:0030246 GO:0031937 GO:0033558 GO:0042754 GO:0043066 GO:0045171 GO:0045449 GO:0045944 GO:0051595 GO:0071333 GO:1900181 GO:1901675 GO:2000678 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s878_g03153.t1 | 1 | 1 | CRAL_TRIO | 72 | 219 | 9.9e-30 | 103.1 | 1.3e-32 | 2.4e-29 | 101.8 |
| habu1_s878_g03153.t1 | 1 | 1 | CRAL_TRIO_2 | 81 | 222 | 1.3e-10 | 41.4 | 1.0e-12 | 1.9e-09 | 37.5 |
| habu1_s878_g03153.t1 | 1 | 1 | Y_phosphatase | 308 | 555 | 0.0 | 270.5 | 0.0 | 0.0 | 269.3 |
| habu1_s878_g03153.t1 | 3 | 1 | PAH | 579 | 608 | 0.0 | 156.8 | 3.7e-12 | 6.9e-09 | 35.1 |
| habu1_s878_g03153.t1 | 3 | 2 | PAH | 645 | 704 | 0.0 | 156.8 | 1.1e-23 | 2.0e-20 | 72.1 |
| habu1_s878_g03153.t1 | 3 | 3 | PAH | 799 | 843 | 0.0 | 156.8 | 3.2e-16 | 6.0e-13 | 48.1 |
| habu1_s878_g03153.t1 | 1 | 1 | Sin3_corepress | 871 | 970 | 3.69943e-43 | 145.3 | 0.0 | 1.00053e-42 | 143.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s878_g03153.t1 | gi|602671972|ref|XP_007441496.1| | PREDICTED: paired amphipathic helix protein Sin3a-like isoform X3 [Python bivittatus] | 0.0 |
| habu1_s878_g03153.t1 | gi|602671968|ref|XP_007441494.1| | PREDICTED: paired amphipathic helix protein Sin3a-like isoform X1 [Python bivittatus] | 0.0 |
| habu1_s878_g03153.t1 | gi|602671970|ref|XP_007441495.1| | PREDICTED: paired amphipathic helix protein Sin3a-like isoform X2 [Python bivittatus] | 0.0 |
| habu1_s878_g03153.t1 | gi|637353793|ref|XP_008118842.1| | PREDICTED: paired amphipathic helix protein Sin3a [Anolis carolinensis] | 0.0 |
| habu1_s878_g03153.t1 | gi|591348846|ref|XP_007068975.1| | PREDICTED: paired amphipathic helix protein Sin3a [Chelonia mydas] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 7.7 |
| Venom grand-1 | 4.4 |
| Pit, infrared sensing | 5.8 |
| Nose | 6.1 |
| Brain-1 | 4.8 |
| Eye | 6.0 |
| fetal fibroblast | 13.7 |
| venom gland-2 | 4.9 |
| Brain-2 | 4.3 |
| Spleen | 4.8 |
| Lung | 8.3 |
| Liver | 3.9 |
| Kidney | 6.1 |
| Pancreas | 3.7 |
| Small intestine | 4.7 |
| Large intestine | 5.7 |
| Stomach | 4.5 |
| heart | 4.5 |
| ovary | 17.6 |
| cheek muscle | 3.6 |
Transcript
| Transcript ID | habu1_s878_g03153.t1 |
|---|---|
| Definition | - |
>habu1_s878_g03153.t1 acttttgcaatagtggcgaatatctgtagctcgggtgtcggatgagggccaccaagcagttcctcgaagagatcaacaag tggaccatccagtacaatgtctcgcctctttcctggaacgtggccgtcaaattcctcatggccaggaaatttgatgttct ccgagcgattgaactcttccactcctacagggaaacgaggttcaaggaaggcatcgtgaagctgaaacctcacgaggagc cgctgaggtcagaactcctgagtggaaaattcaccatcctgagtgtgcgggatccttccggagcctcgattgccctcttc accgctaagttgcaccaccccaataaaagtgtccaacacgtggtacttcaggccctcttctacctgctggacagggcagt ggaaagctttgaaactcagcggaacggcctggtgtttatctacgacatggcggactctcactattccaactttgagctgg atctcagcaagaagatcttgaacttgctgaagggagcctttccagcacgcctgaaaaaggtcttcattgtaggcgccccg atgtggttccgagttccttattccatcatcagcttgttgcttaaagagaaactgcgagaaagggtccagatggtgaaaat gtcggagctcaggcagcacctgccccacgagtgcctccctgagtatttgggagggtctctcaagctggaccccctcagct ggaactgcagattcctcccgcagcagaatgggcacccggaccccctggatgagctgatcctggtccccctggctccacct cgggacaacggttccgtccatatccccgggcccaagtccatgactctgcaggaacttctggagcacgtcaaccagaagca gaagcgaggaatttatgaggaatatgaaggcattcggcaccgaagcccgacgggcacttttgggtgttctctagcgcctt tgaaccaggagaaaaaccgatacggggatgttccctgccttgatcaaaccagggtgaaattgtccaaacagttcaactat caggagatgactgactacatcaatgccagtttcatggatggatacaagcaaaggaatgcttatatcggcactcaagggcc attagaaaacacatacaacgacttctggcgcatggtgtgggaacagaatgtactggtgatcgtgatgaccacaaggattg aagaaggaggcaaaaggaaatgcggtcaatactggccactggagaaggactttcagatcggttatggaaccttaacggtt accaaccttggaacagagaacctcagccattacaagaagacactcctggagatgttcagctgtgagaaccgagagagacg ccgtgtgacccatttccagtacgtgagctggcccgactacggggtcccttcctcagcagccacgctcatcgacttcctgg gagccgtcaagcagcagcagagggtggccgtcagtgccctgggaccacgttacaaaggtcatccaggcgggccacccatt gtggtacactgcagtgccggtattgggaggacaggtactttctgcgcactggatatttgtctgtcacaactgcaagatgt gggtaccctcaacatttaccagacggtggtgcgaatgaggacccagcgcgccttcagcatccagacccctgagcagtatt acttctgctacttggccatccttgagcacgcatacagagaaaacctcctgccctactcccatcccaggatggaggaaaag tggccccatcaagccaccatcgacactccaggggtgatcagccgtgtctctcagctcttcaaaggccacccagatttgat catgggtttcaacaccttcctgcctcccggctacaaaatcgaagtccagaccaacgacatgaacaatcagcccgtcgagt tcaatcacgccatcaactacgtcaacaagatcaagaaccgtttccaagggcagccggacatttataaggctttcttggag atcctccacacctatcagaaagagcagcgaaatgccaaggaagccggcgggaactacaccccggcgttgactgaacagga agtctatgcccaggtggcccgcctctttaagaaccaggaggacttgctctccgaatttgggcagttcttgccagacgcaa acagctcggttctcttgagcaagaccactgccgagaaagtggagtccgtgagaaatgaccacggaggcaccattaagaag ccccagctcaacagcaagcagcagaggcccaatcagaacggctgccaaatccggaggcacgccaccacgggggtgacccc accagtgaagaagaaaccaaagcttaatttgaaggacccatcctttgcagaagctggcaaacatgggacagagtctctgt tctttgacaaggtccgcaaggcactgcgcagcacagaggcctacgagaatttcctccgctgcctcgtcattttcaatcag gaggtcatttcccgagctgagctcgtacagctggtttctccatttctgggaaaattccccgagttgttcacttggtttaa aaacttcctgggctacaaagaatccacacatctggagagcttcccgaaggagcgagctaccgaggggatagcgatggaga tagactatgcttcgtgcaaacggctgggctccagctaccgagccttgcctaaaagctaccagcagcccaaatgcacaggc cggacgccattgtgcagggaggttttgaacgacacctgggtctccttcccatcctggtccgaagattccacgtttgtgag ctcaaagaagactcagtacgaagagcacatctaccgatgcgaggacgaacggtttgaactggatgtggtcttggagacca acctagccaccatccgggtcttggaaacgatacagaagaaactctcccgcttatcggcggaagagcaagccaaataccgt ctcgacaacaccttggggggctcgtccgaagtcatccaccgcaaagctctgcagaggatatacgcggacaaagctgccga catcatcgatggccttcggaaaaatccagccgttgccgtccccattgtgttgaaaaggttgaaaatgaaagaagaggaat ggcgggaagcccagaggggattcaacaaagtgtggcgggaacagaacgagaaatactatttgaaatccctggatcatcag ggcatcaacttcaagcagaacgatactaaggtcctgcgatccaagagtcttctgagtgagattgagaccatttacgacga gaggcaagagcaaacatctgaagacaacaccggccctcacctatccctggcttacgaggacaagcagattctggaagacg cagcctccctgatcatccaccacgtgaagcgtcagacgggcatccagaaagaggacaagtacaaaatcaagcagatcatg taccacttcatcccggacctcctcttcgctcagcgaggggagctctccgacctggaggaggaggaagaggaggagatgga cgtggacgagaactcgggggcggtgaagaagcacaatggggtggggggcaactcccccaaagccaagctgctcttcagca gcaccgcagctcagaagctgcgcagcctggacgaggcctacaacctcttctacgtcaacaacaactggtacatcttcctg cgcctccaccagatcctgtgcctgcggctgttgcgaatctacagccaggcggagcggcagatcgaggtggacagccggga gcgggagtgggagcgggaagtgctgggcgtgaagcgagagaagagcgacactccggccatccagctgcgcttgaaagacc ccatggacatcgaagtggaagactactaccctgctttcctggacatggtgcggaatctcctagacggcaacatggattcc tcccagtacgaggactcgctgcgcgacatgttcaccattcacgcctacattgccttcaccatggacaagctcatccagag tattgtcagacagctccagcacatagtgagtgatgaaatctgcgtgcaggtgaccgagctctacttgtcggagagccaca acggtgcgacgggagggctgctgacctcacagccctctcgctccctggtggaaacggcctatcagcgcaaagccgagcag ttgatgcaggatgagaactgtttcaagatgatgttcgttcagagccgaggccacgttcagttaaccattgaattgctgga tacagaagaggagaactctgacgatcctgttgaggcggagcgttggacggattacgtggatcgctatgtcaactctgact ccacgtctccggaactgcgggaacagctggcccagaagccggtgtttctgcccaggaacctgcggcagatccgtaagtgc cagagaggtcgggagcagcaggagaaggatggcaaagaggtgctgggcaagaagcccctggagaacgtagagagtttgga caagctggagtgcaagttcaagctgaactcctacaagatggtctacgtgatcaagtcggaagattacatgtaccggagga ctgccctgctgcgcgcccatcaggcctgggtggatcggtggacgaaagagcacgtcacccgtgagatggcggccgagacc agccagtggctcatgggggaagccctggagggcctgctgccctgcaccaccacctgcgaggccgaggacttgcattttgt cagcatcaacaaataccgcgtgaagtacagcgcaacctaatcatctctggagcttctgtccctccacttcctggcgggct ttccaaacgagaaggtcttgggcaaacagcttctgctctggttttcttccatgaattttgcccaagattcttcttgagcc aggcagaaaaatggcgattcccaggtgtgggaggggacagaatcgccttcaaccgtannnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcttcctcttc cctcttatccttatccttctctttctttttcttctctttcttcttttttgccacctaattcatgtgatgatttctataca gatgttgtaaacttgactgtagtgcagtatgtccattaaactatcagggctacttgtgtgcc |
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Protein
| Protein ID | habu1_s878_g03153.t1 |
|---|---|
| Definition | - |
>habu1_s878_g03153.t1 MRATKQFLEEINKWTIQYNVSPLSWNVAVKFLMARKFDVLRAIELFHSYRETRFKEGIVKLKPHEEPLRSELLSGKFTIL SVRDPSGASIALFTAKLHHPNKSVQHVVLQALFYLLDRAVESFETQRNGLVFIYDMADSHYSNFELDLSKKILNLLKGAF PARLKKVFIVGAPMWFRVPYSIISLLLKEKLRERVQMVKMSELRQHLPHECLPEYLGGSLKLDPLSWNCRFLPQQNGHPD PLDELILVPLAPPRDNGSVHIPGPKSMTLQELLEHVNQKQKRGIYEEYEGIRHRSPTGTFGCSLAPLNQEKNRYGDVPCL DQTRVKLSKQFNYQEMTDYINASFMDGYKQRNAYIGTQGPLENTYNDFWRMVWEQNVLVIVMTTRIEEGGKRKCGQYWPL EKDFQIGYGTLTVTNLGTENLSHYKKTLLEMFSCENRERRRVTHFQYVSWPDYGVPSSAATLIDFLGAVKQQQRVAVSAL GPRYKGHPGGPPIVVHCSAGIGRTGTFCALDICLSQLQDVGTLNIYQTVVRMRTQRAFSIQTPEQYYFCYLAILEHAYRE NLLPYSHPRMEEKWPHQATIDTPGVISRVSQLFKGHPDLIMGFNTFLPPGYKIEVQTNDMNNQPVEFNHAINYVNKIKNR FQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEFGQFLPDANSSVLLSKTTAEKV ESVRNDHGGTIKKPQLNSKQQRPNQNGCQIRRHATTGVTPPVKKKPKLNLKDPSFAEAGKHGTESLFFDKVRKALRSTEA YENFLRCLVIFNQEVISRAELVQLVSPFLGKFPELFTWFKNFLGYKESTHLESFPKERATEGIAMEIDYASCKRLGSSYR ALPKSYQQPKCTGRTPLCREVLNDTWVSFPSWSEDSTFVSSKKTQYEEHIYRCEDERFELDVVLETNLATIRVLETIQKK LSRLSAEEQAKYRLDNTLGGSSEVIHRKALQRIYADKAADIIDGLRKNPAVAVPIVLKRLKMKEEEWREAQRGFNKVWRE QNEKYYLKSLDHQGINFKQNDTKVLRSKSLLSEIETIYDERQEQTSEDNTGPHLSLAYEDKQILEDAASLIIHHVKRQTG IQKEDKYKIKQIMYHFIPDLLFAQRGELSDLEEEEEEEMDVDENSGAVKKHNGVGGNSPKAKLLFSSTAAQKLRSLDEAY NLFYVNNNWYIFLRLHQILCLRLLRIYSQAERQIEVDSREREWEREVLGVKREKSDTPAIQLRLKDPMDIEVEDYYPAFL DMVRNLLDGNMDSSQYEDSLRDMFTIHAYIAFTMDKLIQSIVRQLQHIVSDEICVQVTELYLSESHNGATGGLLTSQPSR SLVETAYQRKAEQLMQDENCFKMMFVQSRGHVQLTIELLDTEEENSDDPVEAERWTDYVDRYVNSDSTSPELREQLAQKP VFLPRNLRQIRKCQRGREQQEKDGKEVLGKKPLENVESLDKLECKFKLNSYKMVYVIKSEDYMYRRTALLRAHQAWVDRW TKEHVTREMAAETSQWLMGEALEGLLPCTTTCEAEDLHFVSINKYRVKYSATXSSLELLSLHFLAGFPNEKVLGKQLLLW FSSMNFAQDSS |
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