Gene
| Gene Model ID | habu1_s878_g03156 |
|---|---|
| Locus | habu1_scaffold878 : 1986389 ... 2024970 : - |
| To GenomeBrowser | habu1_scaffold878:1986389..2024970 |
| Genes list of scaffold | habu1_scaffold878 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| chondroitin sulfate proteoglycan 4 | GO:0000187 GO:0005886 GO:0005925 GO:0007169 GO:0008283 GO:0008347 GO:0019901 GO:0050731 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s878_g03156.t1 | 2 | 1 | Laminin_G_1 | 35 | 161 | 2.2e-26 | 92.4 | 5.2e-18 | 3.8e-14 | 52.8 |
| habu1_s878_g03156.t1 | 2 | 1 | Laminin_G_2 | 35 | 159 | 6.4e-36 | 123.2 | 2.1e-16 | 1.5e-12 | 47.6 |
| habu1_s878_g03156.t1 | 2 | 2 | Laminin_G_2 | 221 | 353 | 6.4e-36 | 123.2 | 1.0e-23 | 7.6e-20 | 71.2 |
| habu1_s878_g03156.t1 | 2 | 2 | Laminin_G_1 | 222 | 355 | 2.2e-26 | 92.4 | 7.2e-13 | 5.3e-09 | 36.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s878_g03156.t1 | gi|602654845|ref|XP_007433219.1| | PREDICTED: chondroitin sulfate proteoglycan 4 [Python bivittatus] | 0.0 |
| habu1_s878_g03156.t1 | gi|637345868|ref|XP_008117382.1| | PREDICTED: chondroitin sulfate proteoglycan 4 [Anolis carolinensis] | 0.0 |
| habu1_s878_g03156.t1 | gi|530594095|ref|XP_005290638.1| | PREDICTED: chondroitin sulfate proteoglycan 4 isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s878_g03156.t1 | gi|591348840|ref|XP_007068972.1| | PREDICTED: chondroitin sulfate proteoglycan 4 [Chelonia mydas] | 0.0 |
| habu1_s878_g03156.t1 | gi|557293309|ref|XP_006029137.1| | PREDICTED: chondroitin sulfate proteoglycan 4 [Alligator sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.8 |
| Venom grand-1 | 0.2 |
| Pit, infrared sensing | 1.9 |
| Nose | 0.5 |
| Brain-1 | 0.6 |
| Eye | 0.4 |
| fetal fibroblast | 1.3 |
| venom gland-2 | 0.1 |
| Brain-2 | 0.2 |
| Spleen | 0.3 |
| Lung | 2.3 |
| Liver | 0.1 |
| Kidney | 0.2 |
| Pancreas | 0.6 |
| Small intestine | 0.7 |
| Large intestine | 2.2 |
| Stomach | 1.7 |
| heart | 1.3 |
| ovary | 1.5 |
| cheek muscle | 0.6 |
Transcript
| Transcript ID | habu1_s878_g03156.t1 |
|---|---|
| Definition | - |
>habu1_s878_g03156.t1 ttccgttctattctattctattctattctattctattctattctattccattccattccactccacttcactaaatgata ggaaatttctcttcatttccagtgtctttttttggagatgactatgtggagatccccttgatccacacctacagcaccat ccatcttcacgtgcagttcctcaccagctatcatagtgccttcctcttcttggctgctggacaaaaggactaccttcttc tagagcttcgtgctggtgtcctacaggccagaatggacctgggctccggagaactgtctgtcaggtccccagcagaactg caattcaacaatcttgtgactcatgatgttgatcttctggtgacagatgacaagatgatattgattgtggatggcctctt taatatctccacagaaattccagagcctcttcaagaattggacattgattatgggctctacgtggcaggtacaggaaacc tggaattgccgtatctcactggagtgagtttgtcattccggggctgtctccatactctgacgtttaatgatcatgatgtc ctctctgcactggcaaccaacactggcatcaaagcatcccgtggcacccgtgagggatgcagtgaagaattctctgctgg tcctgaggttcctttgggcttcttaggatcaaactcttatatcacatttcctggatgggatgcaaggaatggaggaacca tagagtttgtgatcactacaagtgtcaaacaggcccctttgctttaccaatcgggggtggaaaaggatttcttctacctt gaaatctttgatggacacttaagaggtgtggtggagaaggggagtggcctggtgctgcttcacaacaatatctacctcag caacgaacaggatcactacgtcaaggtctacatggacaatcgaaaatttgagatcctggttgactactatgtctcacaga cctctagcaaggggatccatagctactttgatcttcaaggacctctttttcttggtggtctgaatgagaaggctgccagc agaatgaaagaccgtggactgggctttatacctgcaaacagcttcttcaataactcctttgtgggttgtatagaggactt gaggattaatgaggaaaggatgagcctacaagatgctcttgtcactaaggacataaatgctggctgtggaaaatcagacc agtactcagattatgacaacgtttatgaacaggatgaggccaccacaagctctcctctagacagttggcagggccctgtt atggagccctgtcgcccagatcctagcttgccaccagtctttactaatttcaccaaactattgcacgtcagtcccctggt agttgctgaagggggcacagcttttttggagtggtggcacactcagccgaccattgacctcaaccgtgcaaacatcaggc aatctcaagtgctcttcagtgtcactacagatccaagacacgggcagctggaattaaacctctccaaagtcaggagcaga ggcaaattcactctcttggacattgtgaatcggaaagtcaagtatgttcatgatggttctgagggtcccatggatcagct gctcttggaggtcactgtaactgccagaggagatattccggagtgtttatggcaaggccagatatatttgctccccatta agatcaaccccgtcaatgatgctcccgaagtggtttttccacatggagatcacatggtcatcctggaacacacacgcaaa catctccactcaaccatctttcaagcccatgatgacgacaccccctgtgacagcttgcgattccaagtgcttggtgggat gagaatggaagaaggatatctggagtacgacttccatcctggagtcccaattgaagagttttcctgtagagacctggaag caggccacatggtctatgtccatcaagatgggcctgtatccacccttaccatccaagtgaacgatggcatggtgatgagc ccggtggcgaccttgaggatagaagcagtggagccagatatccaagtccacaacaacacaggactctttgtcctacaagg agacaatgtttcaataaccaaagccaacctttctgtagatcttaatgcagtccagcaaaaagtgtctgtgttgtatcgct tgacctcctctctccagtatggtgagatccagaagcaaggagggctgagtggagagtggaagaagacagaatctttttac cagcaggatattgatcaaggacgcgtccgctacgctagcacagatgacgaacatcgagtagaagacatgattgagaagct gcagttcaccatccaggtgggccagaagatcctgaacaacaacagcttccccataagagttaaaagggctgccatcagga tgaaaaccatgatccccatccggatgaaaaacgagaaagagaaaaacatcacatctgctgaactggaggcagttttggaa gaggcaggttctaaccaagtgactttccactatgtgatccttcagtcaccaaaaaagggaaatcttgaacttcaggacac ccggttggctgagggcttgagttttacccaggaagatttgcagagaggactactgagttacgttgcaactgttagagact ccaaggaaacagaagatgtattccagttccgggtcatggctaaaccctactattcccctgtatatacttacaaaatagag atagggggagatccagatacccctgtcttgactaatgtccttttgtccattttagaaggaggacaggccatcattaccaa ggactacttgtttgtcaagagtgccaacagcatgaactacatatatgaggtgatcgatggtcccacccatgggaagcttc tctggagaacctctgagcttgggtcaaccagggaggagataatagcaacattcaccaatgaagacatcctgcaaggtcgc cttgtctaccagcatgatgattctgagactctagaagatgacatcccatttgtagccatcaagcaggtggaaggaagctt tgactcggaggctgaggaggtgagaggtgtcttcagggtctccattcagcctgtcaatgaccacaccccagttcaggtgg tcaacaaggtcttcaatgtggttcgtaaaggtcagcgcctgatgaccacagaagacatcgcctttatcgatgaagattcg ggcttctcagatgcacagttggtgttggtaagaaaagatattctttttggtagcatcattgctgcagatgatataagtag ccaactgtatcgcttcactcaagatgacttgaggaagaaaaaaatcctttttgtccactcaggagctgaccggggctgga ttcagttccaggtttctgatggtctacaccagatcacaacacttctggaagtgcaagcttcggacccttacctcaagatc aaccatactgacttggttattcaccaaggtagccaagaggccattgactcctctgtcctcaggatggaaaccaacatgga catcaggaatgaccaagacatcctcttccgtatcttggccccacccttgtgggggatgttgctacgagatggccaagaaa taacatcttttacaaaaagggatctcctggcaggagatattatttatcatcataacgggagcagagattctcaagatact gttcatttttctgttgaagcaaaccaggtgtctgtggaggagacactgaaagttaccatattagcagattcccatcctga cccactaaatcttgttcacaacgagaagatacacatcctccaaggagaagcaatggccattaaaaatgattacttgctgg ttgagcatgatgaaattgaaccccaaaatatcatctacacaattatcaactctcccaactcaggatttctggtggctttg tctgaaaaccatgcttcagatgaacctccaagcctggatcccatccagaccttcacccaggaagatgtaaatgaaggcaa agtcctctttctccattccagccctgagattcagagtgatcagttcatggttgatgttactgctgatggagtagatgctc tgaaagaggtagtggtggacctggagattcttcccatttcagtccctttggaggttcacaatttcacagtgactgaagga cgcaaccaggtgctttccatggatatcctaaatattccctccacttactcctcatctttcgatgtagaatttgtggttgt tgagataccagaacatggcactttccagaatatggaaagacctgaagaaggcagcttaaatgttttctcctgggatgagg tggagaatcagctcatcaagtacatacacgatggaagtgagtccttgactgacagattcacagtcattgccaatgtttct gaagttaatcaacagagccaacccaagaccatctccattagcatctctccagtcaacgatgaggcaccagtgctaatggt caacacacaactgcaggttgaagaagggggcactgccgagattaccccagaaattctccagagtaaagatgaagacaccc ctctagaagaagtcatctattccatcaggaccccagtcaacgggaaagtggtgttgaaatcatcacctgacagtccaatc cagcggttcacccaggcccagataaacagccatcttgttcaattcatccatgaaggacctctggagggagggttttcctt cgatctatctgatggtgagaacatgtctccaggacacttttttgctgtgaaagcccaaaagaaacttatcatcagtctga aaaataagcaagatctgatggtgtgcccaggatcttctcagccagtcagcagtcagaacctgaaagcagtgaccaatcaa gaagccgaaaagtctttattttacatcatacaacaacctccacagtttggcaagctgttgaatagccagaagaacaacgg ggaagagctgagaaatttcacccaagctgaggtagatgctggaatcattgcataccaccatgagatgccaccagaacctt tctggatccgtgaagataatttccacttccaaatttcttctccatcggtgaccacagacctatttgtccttggtgtggtg atatcgttcgaggccagctgtcctcagggctcctctcagctgtggagaaataaaggcctcactgtcccagaagctcaaag tgcagccatcaacatctcattactggatgcgtccaaccttctaaccaaagaactggaaccaaagagagcctcctatgacg tggtctttctggtgaccaaattgcccacgtatgggaccctttctcttccagatggtccagttaataagagacacccctat tttctgcaatcggaccttgctgcaggtggactggaatatttccacaacggtcctggattcctggatgattatttcagatt tgatgcttggctccggcacaacatggtgaaatctattcagccgccacaaaatggagatgaaatcattatttctgaggtgt tcaatatcacagtgagagacagtaatgagattccaccaaaactagtcagccaaacaaaagttctacaagttctccaaggt tcctctacagtgatctcccaagaacatttgaatgtcatagatccagacaatttccctgaagaaatccaatacaacattag ttctggatcttcaactggatcgatagctaaggcccataatatgttggtacctataaacaaattcacacaagcagatatca atgcagggtacctggtgtttattgccaatagaacaagttctactggaatcctggagcttgttgtgtcggatggactccac aaacccatttccacttttctgaaaatcatagttcttccagcaaccatatgggcaaccaatcagaccatcttggaaatacc ccaagacctgaacatggcttcactgtctcacaaacatcttctaggctctttggaccaaggagggcaaaataccctctatg agctcatcagagacccagagtatgggcaggtggaagtcaatcgaaagcccgtgagaagtttttcacaacgacaggtggac aatggggaagtgatctttactttcacacatttggtctcttccaaagatgaatttcaattccttgccacatcaggagcaat caatatctcaggggttgtgaatgtaacagtcaaggccttggtcaaaacccagcaggagatcctttggccaagaggaacca ctatccagctcaataccaatatccttgatgcacacgatctggccaacaggacaaacagcctccctgagttcagaattctc caagcacctcaagggagcaatttggtgaaagtctccagggacaacaaggatcggcctgtctccatcaatgctttcaccca agatgacctcgagaaagggctagttgggttagaaatatgggagacagaagattcagggtcaaatctccaagaggaccgcc ttcaatttgaattggttgcgaaaggtgttccccctgccttgggctggatggtgtacaccactgagaccttcaactcctca accccttatagggccaccttgatcaatatgccaggtccccaggaaagcagccatagctcaaccccacagagcataacttc acccttccagacttttacaaccatgccttatgaatccaaaatgcccctctctcattccaataaatcccgggtcctcccaa caaccaggtcaggccaaggagcaacatctgagacagaaaagagctctctgctgggtttcattgaagccaatatgttcagc atcatcctccccatttgtctcattcttctgctcctggcattgatcctacctctactcttctatctccacaaacggaacaa gactggcaagcacaatgtccaggggacaccccccaaatacaagaatggaacggtggtggaccaagaaaccttccgtaaga ctgatcctagtcaaaccatacctctgaccaccatcaataccttggaggccaaagaaccaggatccaactcaaaaggatcc ggtccaggaagacaacaggatccagaattgctccagtactgcaggacatctaacccagctttgaaaaacagccaatattg ggtttaagtactggaatcaaagactaaacaggccatcagtctctttgcagagtgccaccattttctgaagtttcctttcc tgccatcctttctcttctatctgcagttatgtagaagagaccaaaattttttaagagtaggaagctttggtgccttccaa gatgtttattcattgggaatgatgcctttggaataggggtgggcaattatggtccctttatgacccgtggacttcaactc tgaggatcccttagccagccatggctggctcaggaattctgggagttgaagtccacaggttgtaaaggagtcatagttgc ccatccttgcttcggagggtatcataaactactgaaactctttagaacta |
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Protein
| Protein ID | habu1_s878_g03156.t1 |
|---|---|
| Definition | - |
>habu1_s878_g03156.t1 MIGNFSSFPVSFFGDDYVEIPLIHTYSTIHLHVQFLTSYHSAFLFLAAGQKDYLLLELRAGVLQARMDLGSGELSVRSPA ELQFNNLVTHDVDLLVTDDKMILIVDGLFNISTEIPEPLQELDIDYGLYVAGTGNLELPYLTGVSLSFRGCLHTLTFNDH DVLSALATNTGIKASRGTREGCSEEFSAGPEVPLGFLGSNSYITFPGWDARNGGTIEFVITTSVKQAPLLYQSGVEKDFF YLEIFDGHLRGVVEKGSGLVLLHNNIYLSNEQDHYVKVYMDNRKFEILVDYYVSQTSSKGIHSYFDLQGPLFLGGLNEKA ASRMKDRGLGFIPANSFFNNSFVGCIEDLRINEERMSLQDALVTKDINAGCGKSDQYSDYDNVYEQDEATTSSPLDSWQG PVMEPCRPDPSLPPVFTNFTKLLHVSPLVVAEGGTAFLEWWHTQPTIDLNRANIRQSQVLFSVTTDPRHGQLELNLSKVR SRGKFTLLDIVNRKVKYVHDGSEGPMDQLLLEVTVTARGDIPECLWQGQIYLLPIKINPVNDAPEVVFPHGDHMVILEHT RKHLHSTIFQAHDDDTPCDSLRFQVLGGMRMEEGYLEYDFHPGVPIEEFSCRDLEAGHMVYVHQDGPVSTLTIQVNDGMV MSPVATLRIEAVEPDIQVHNNTGLFVLQGDNVSITKANLSVDLNAVQQKVSVLYRLTSSLQYGEIQKQGGLSGEWKKTES FYQQDIDQGRVRYASTDDEHRVEDMIEKLQFTIQVGQKILNNNSFPIRVKRAAIRMKTMIPIRMKNEKEKNITSAELEAV LEEAGSNQVTFHYVILQSPKKGNLELQDTRLAEGLSFTQEDLQRGLLSYVATVRDSKETEDVFQFRVMAKPYYSPVYTYK IEIGGDPDTPVLTNVLLSILEGGQAIITKDYLFVKSANSMNYIYEVIDGPTHGKLLWRTSELGSTREEIIATFTNEDILQ GRLVYQHDDSETLEDDIPFVAIKQVEGSFDSEAEEVRGVFRVSIQPVNDHTPVQVVNKVFNVVRKGQRLMTTEDIAFIDE DSGFSDAQLVLVRKDILFGSIIAADDISSQLYRFTQDDLRKKKILFVHSGADRGWIQFQVSDGLHQITTLLEVQASDPYL KINHTDLVIHQGSQEAIDSSVLRMETNMDIRNDQDILFRILAPPLWGMLLRDGQEITSFTKRDLLAGDIIYHHNGSRDSQ DTVHFSVEANQVSVEETLKVTILADSHPDPLNLVHNEKIHILQGEAMAIKNDYLLVEHDEIEPQNIIYTIINSPNSGFLV ALSENHASDEPPSLDPIQTFTQEDVNEGKVLFLHSSPEIQSDQFMVDVTADGVDALKEVVVDLEILPISVPLEVHNFTVT EGRNQVLSMDILNIPSTYSSSFDVEFVVVEIPEHGTFQNMERPEEGSLNVFSWDEVENQLIKYIHDGSESLTDRFTVIAN VSEVNQQSQPKTISISISPVNDEAPVLMVNTQLQVEEGGTAEITPEILQSKDEDTPLEEVIYSIRTPVNGKVVLKSSPDS PIQRFTQAQINSHLVQFIHEGPLEGGFSFDLSDGENMSPGHFFAVKAQKKLIISLKNKQDLMVCPGSSQPVSSQNLKAVT NQEAEKSLFYIIQQPPQFGKLLNSQKNNGEELRNFTQAEVDAGIIAYHHEMPPEPFWIREDNFHFQISSPSVTTDLFVLG VVISFEASCPQGSSQLWRNKGLTVPEAQSAAINISLLDASNLLTKELEPKRASYDVVFLVTKLPTYGTLSLPDGPVNKRH PYFLQSDLAAGGLEYFHNGPGFLDDYFRFDAWLRHNMVKSIQPPQNGDEIIISEVFNITVRDSNEIPPKLVSQTKVLQVL QGSSTVISQEHLNVIDPDNFPEEIQYNISSGSSTGSIAKAHNMLVPINKFTQADINAGYLVFIANRTSSTGILELVVSDG LHKPISTFLKIIVLPATIWATNQTILEIPQDLNMASLSHKHLLGSLDQGGQNTLYELIRDPEYGQVEVNRKPVRSFSQRQ VDNGEVIFTFTHLVSSKDEFQFLATSGAINISGVVNVTVKALVKTQQEILWPRGTTIQLNTNILDAHDLANRTNSLPEFR ILQAPQGSNLVKVSRDNKDRPVSINAFTQDDLEKGLVGLEIWETEDSGSNLQEDRLQFELVAKGVPPALGWMVYTTETFN SSTPYRATLINMPGPQESSHSSTPQSITSPFQTFTTMPYESKMPLSHSNKSRVLPTTRSGQGATSETEKSSLLGFIEANM FSIILPICLILLLLALILPLLFYLHKRNKTGKHNVQGTPPKYKNGTVVDQETFRKTDPSQTIPLTTINTLEAKEPGSNSK GSGPGRQQDPELLQYCRTSNPALKNSQYWV |
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