Gene
| Gene Model ID | habu1_s878_g03160 |
|---|---|
| Locus | habu1_scaffold878 : 2474045 ... 2518145 : - |
| To GenomeBrowser | habu1_scaffold878:2474045..2518145 |
| Genes list of scaffold | habu1_scaffold878 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| high mobility group protein 20a isoform x1 | GO:0000122 GO:0005634 GO:0016568 GO:0045665 GO:0046982 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s878_g03160.t3 | 1 | 1 | HMG_box_2 | 149 | 218 | 7.4e-13 | 48.6 | 3.9e-16 | 1.5e-12 | 47.7 |
| habu1_s878_g03160.t3 | 1 | 1 | HMG_box | 151 | 218 | 7.7e-19 | 67.7 | 6.0e-22 | 2.2e-18 | 66.2 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 21.4 |
| Venom grand-1 | 30.2 |
| Pit, infrared sensing | 23.0 |
| Nose | 25.1 |
| Brain-1 | 23.7 |
| Eye | 23.2 |
| fetal fibroblast | 44.6 |
| venom gland-2 | 32.9 |
| Brain-2 | 29.9 |
| Spleen | 19.5 |
| Lung | 29.5 |
| Liver | 18.8 |
| Kidney | 21.8 |
| Pancreas | 16.0 |
| Small intestine | 17.0 |
| Large intestine | 28.2 |
| Stomach | 28.8 |
| heart | 19.7 |
| ovary | 65.2 |
| cheek muscle | 18.0 |
Transcript
| Transcript ID | habu1_s878_g03160.t1 |
|---|---|
| Definition | - |
>habu1_s878_g03160.t1 cagtctctctctttctgtctctcattctctaggcgaggaaagggcgtggcctcttccagccacccaatcagctcttgcct gctttcggagtcgggaatttatgtaatagcactgactggaaattaatttgcaaagggctaacatctgtccgctaacccta tgcaactgtggagcaagagactgctgtctaccattatttccaagaaagagaactgtcagatgaagacctatcaggtaatg gagaatccgatgagcagcgcatttctttcgtcacgtattcaagaagacgatggcttaaaagagaacattgatgttccacc tggggtaaatcattcagaaggatcgtgcggtggcagcgcctcccagcctgccagccatccagattttgccgaagacgtct tgcaaagccaactgttgcgcaatgagtcatttcataaagctgaacatagcgaactgagggccgaggaggagagcgccaag agaggaggctggtctaaagggcggaagaggaagaagcctttaagggacagcaatgcccccaagtcccccctcacgggcta cgtcaggtttatgaacgagcgccgggagcagcttcgcgccaagagacccgaagtcccgtttccagaaatcacccggatgt tgggcaacgaatggagcaaactcccgccagaggagaaacggcgctaccttgacgaagccgacagagataaggagcgctac atgaaggagctggagcagtaccagaagacggaggcgtacaaggtctttagcaggaaaacccaggacagacagaaaggcaa atcacatcggcaagaaggaacacgcccagctacccatgaccatcagaaggaaccggatacaaaggagagatcggttttcg acattccaatatttacagaggagtttttaaaccacagtaaagcgcgagaagccgagctgcgtcagctgcgcaagtccaac atggagtttgaggaaaggaacgcggccctgcagaagcacgtggagagcatgaggaccgcggtggaaaagctggaggtgga cgtgatccacgagcgcagtcgcaacacggtgttgcaacagcacttggaaacattacgacaggctctagctggtagctttg ctggggtccccttaccagggagcggggagacccccaccttagacactattgattcctacatgaatcggctgcacaacctt atcctggccaacccacaagacaacgagactcttatagcgacagtccgggaggttataaaccatcttgaacgttaatcact tgtttctagggatttttttttcccttaaagggggaaagaagcctggaacgtgacccattgtgtggaactaagccaagaaa tggaaggcaaaaagttggagataagctccagttctttactttaaagcttgaggaggactatgtttttgagaagtcgcgat aagataatggcctcctctcagctcaatttttctgccccgtcctccattccttatcgtttatccactagccatggaccaac tgcgccgaacaacacgagggctgtgcttcgttctcatttgagtcaaggttgtttttatttttgtggcaacgaaaactaag ctctgaaatgttttttcttcacgtgttccaggggagagcattttgcctgcctctttgctcctcagtttcatttcggtcct gtcttgcccaacacaaacgtccatgggcttcccttggcgtgaagaccgaccagcctccttctgacattaaaaatacaaga tcttcacgtacacttcatagatcttcatggtcccaacttctttttattttgtagcatgctacttagtttggtgtttacgg gagtcttactccaatctctctctctctctctgtctgtctctctctgtctcaaaaccaggaaacgtgcaaagggtctttgt gtgtgtctggggggggggggttacgtttcttccccttttttggtaaaatgtgatgatccttaagaaataaatgatgttaa aaagggatgtcca |
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| Transcript ID | habu1_s878_g03160.t2 |
| Definition | - |
>habu1_s878_g03160.t2 acttacgacctgtttagtcctcgacttatgaccggtttagtcctcgacttacgaccgctgaccttccatctctggaatgt tgtatccacatcttatttatgtaatctggcgaatttggaatctgcacaggaccatccatcacctggaattgagaagcaaa atctggatgttccagtaatggagaatccgatgagcagcgcatttctttcgtcacgtattcaagaagacgatggcttaaaa gagaacattgatgttccacctggggtaaatcattcagaaggatcgtgcggtggcagcgcctcccagcctgccagccatcc agattttgccgaagacgtcttgcaaagccaactgttgcgcaatgagtcatttcataaagctgaacatagcgaactgaggg ccgaggaggagcgctaccttgacgaagccgacagagataaggagcgctacatgaaggagctggagcagtaccagaagacg gaggcgtacaaggtctttagcaggaaaacccaggacagacagaaaggcaaatcacatcggcaagaaggaacacgcccagc tacccatgaccatcagaaggaaccggatacaaaggagagatcggttttcgacattccaatatttacagaggagtttttaa accacagtaaagcgcgagaagccgagctgcgtcagctgcgcaagtccaacatggagtttgaggaaaggaacgcggccctg cagaagcacgtggagagcatgaggaccgcggtggaaaagctggaggtggacgtgatccacgagcgcagtcgcaacacggt gttgcaacagcacttggaaacattacgacaggctctagctggtagctttgctggggtccccttaccagggagcggggaga cccccaccttagacactattgattcctacatgaatcggctgcacaaccttatcctggccaacccacaagacaacgagact cttatagcgacagtccgggaggttataaaccatcttgaacgttaatcacttgtttctagggatttttttttcccttaaag ggggaaagaagcctggaacgtgacccattgtgtggaactaagccaagaaatggaaggcaaaaagttggagataagctcca gttctttactttaaagcttgaggaggactatgtttttgagaagtcgcgataagataatggcctcctctcagctcaatttt tctgccccgtcctccattccttatcgtttatccactagccatggaccaactgcgccgaacaacacgagggctgtgcttcg ttctcatttgagtcaaggttgtttttatttttgtggcaacgaaaactaagctctgaaatgttttttcttcacgtgttcca ggggagagcattttgcctgcctctttgctcctcagtttcatttcggtcctgtcttgcccaacacaaacgtccatgggctt cccttggcgtgaagaccgaccagcctccttctgacattaaaaatacaagatcttcacgtacacttcatagatcttcatgg tcccaacttctttttattttgtagcatgctacttagtttggtgtttacgggagtcttactccaatctctctctctctctc tgtctgtctctctctgtctcaaaaccaggaaacgtgcaaagggtctttgtgtgtgtctggggggggggggttacgtttct tccccttttttggtaaaatgtgatgatccttaagaaataaatgatgttaaaaagggatgtcca |
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| Transcript ID | habu1_s878_g03160.t3 |
| Definition | - |
>habu1_s878_g03160.t3 acttacgacctgtttagtcctcgacttatgaccggtttagtcctcgacttacgaccgctgaccttccatctctggaatgt tgtatccacatcttatttatgtaatctggcgaatttggaatctgcacaggaccatccatcacctggaattgagaagcaaa atctggatgttccagtaatggagaatccgatgagcagcgcatttctttcgtcacgtattcaagaagacgatggcttaaaa gagaacattgatgttccacctggggtaaatcattcagaaggatcgtgcggtggcagcgcctcccagcctgccagccatcc agattttgccgaagacgtcttgcaaagccaactgttgcgcaatgagtcatttcataaagctgaacatagcgaactgaggg ccgaggaggagagcgccaagagaggaggctggtctaaagggcggaagaggaagaagcctttaagggacagcaatgccccc aagtcccccctcacgggctacgtcaggtttatgaacgagcgccgggagcagcttcgcgccaagagacccgaagtcccgtt tccagaaatcacccggatgttgggcaacgaatggagcaaactcccgccagaggagaaacggcgctaccttgacgaagccg acagagataaggagcgctacatgaaggagctggagcagtaccagaagacggaggcgtacaaggtctttagcaggaaaacc caggacagacagaaaggcaaatcacatcggcaagaaggaacacgcccagctacccatgaccatcagaaggaaccggatac aaaggagagatcggttttcgacattccaatatttacagaggagtttttaaaccacagtaaagcgcgagaagccgagctgc gtcagctgcgcaagtccaacatggagtttgaggaaaggaacgcggccctgcagaagcacgtggagagcatgaggaccgcg gtggaaaagctggaggtggacgtgatccacgagcgcagtcgcaacacggtgttgcaacagcacttggaaacattacgaca ggctctagctggtagctttgctggggtccccttaccagggagcggggagacccccaccttagacactattgattcctaca tgaatcggctgcacaaccttatcctggccaacccacaagacaacgagactcttatagcgacagtccgggaggttataaac catcttgaacgttaatcacttgtttctagggatttttttttcccttaaagggggaaagaagcctggaacgtgacccattg tgtggaactaagccaagaaatggaaggcaaaaagttggagataagctccagttctttactttaaagcttgaggaggacta tgtttttgagaagtcgcgataagataatggcctcctctcagctcaatttttctgccccgtcctccattccttatcgttta tccactagccatggaccaactgcgccgaacaacacgagggctgtgcttcgttctcatttgagtcaaggttgtttttattt ttgtggcaacgaaaactaagctctgaaatgttttttcttcacgtgttccaggggagagcattttgcctgcctctttgctc ctcagtttcatttcggtcctgtcttgcccaacacaaacgtccatgggcttcccttggcgtgaagaccgaccagcctcctt ctgacattaaaaatacaagatcttcacgtacacttcatagatcttcatggtcccaacttctttttattttgtagcatgct acttagtttggtgtttacgggagtcttactccaatctctctctctctctctgtctgtctctctctgtctcaaaaccagga aacgtgcaaagggtctttgtgtgtgtctggggggggggggttacgtttcttccccttttttggtaaaatgtgatgatcct taagaaataaatgatgttaaaaagggatgtcca |
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Protein
| Protein ID | habu1_s878_g03160.t1 |
|---|---|
| Definition | - |
>habu1_s878_g03160.t1 MQLWSKRLLSTIISKKENCQMKTYQVMENPMSSAFLSSRIQEDDGLKENIDVPPGVNHSEGSCGGSASQPASHPDFAEDV LQSQLLRNESFHKAEHSELRAEEESAKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRM LGNEWSKLPPEEKRRYLDEADRDKERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQEGTRPATHDHQKEPDTKERSVF DIPIFTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIHERSRNTVLQQHLETLRQALAGSF AGVPLPGSGETPTLDTIDSYMNRLHNLILANPQDNETLIATVREVINHLER |
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| Protein ID | habu1_s878_g03160.t2 |
| Definition | - |
>habu1_s878_g03160.t2 MTGLVLDLRPLTFHLWNVVSTSYLCNLANLESAQDHPSPGIEKQNLDVPVMENPMSSAFLSSRIQEDDGLKENIDVPPGV NHSEGSCGGSASQPASHPDFAEDVLQSQLLRNESFHKAEHSELRAEEERYLDEADRDKERYMKELEQYQKTEAYKVFSRK TQDRQKGKSHRQEGTRPATHDHQKEPDTKERSVFDIPIFTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRT AVEKLEVDVIHERSRNTVLQQHLETLRQALAGSFAGVPLPGSGETPTLDTIDSYMNRLHNLILANPQDNETLIATVREVI NHLER |
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| Protein ID | habu1_s878_g03160.t3 |
| Definition | - |
>habu1_s878_g03160.t3 MTGLVLDLRPLTFHLWNVVSTSYLCNLANLESAQDHPSPGIEKQNLDVPVMENPMSSAFLSSRIQEDDGLKENIDVPPGV NHSEGSCGGSASQPASHPDFAEDVLQSQLLRNESFHKAEHSELRAEEESAKRGGWSKGRKRKKPLRDSNAPKSPLTGYVR FMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKRRYLDEADRDKERYMKELEQYQKTEAYKVFSRKTQDRQKGKSH RQEGTRPATHDHQKEPDTKERSVFDIPIFTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVI HERSRNTVLQQHLETLRQALAGSFAGVPLPGSGETPTLDTIDSYMNRLHNLILANPQDNETLIATVREVINHLER |
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