Gene
| Gene Model ID | habu1_s8795_g18893 |
|---|---|
| Locus | habu1_scaffold8795 : 385470 ... 414245 : - |
| To GenomeBrowser | habu1_scaffold8795:385470..414245 |
| Genes list of scaffold | habu1_scaffold8795 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| bromodomain and phd finger-containing protein 3 isoform x1 | GO:0008270 GO:0043966 GO:0070776 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s8795_g18893.t1 | 1 | 1 | EPL1 | 48 | 194 | 5.1e-32 | 111.3 | 2.7e-35 | 5.1e-32 | 111.3 |
| habu1_s8795_g18893.t1 | 1 | 1 | PHD | 215 | 261 | 2.9e-06 | 26.8 | 3.0e-07 | 0.00056 | 19.5 |
| habu1_s8795_g18893.t1 | 1 | 1 | PHD_2 | 227 | 259 | 3.4e-12 | 45.4 | 1.8e-15 | 3.4e-12 | 45.4 |
| habu1_s8795_g18893.t1 | 1 | 1 | zf-HC5HC2H_2 | 268 | 386 | 9.5e-38 | 128.5 | 5.10003e-41 | 9.5e-38 | 128.5 |
| habu1_s8795_g18893.t1 | 1 | 1 | zf-HC5HC2H | 289 | 387 | 9.5e-27 | 92.9 | 5.1e-30 | 9.5e-27 | 92.9 |
| habu1_s8795_g18893.t1 | 1 | 1 | Bromodomain | 567 | 646 | 1.3e-24 | 85.9 | 2.7e-27 | 5.1e-24 | 84.0 |
| habu1_s8795_g18893.t1 | 1 | 1 | PWWP | 860 | 971 | 1.5e-14 | 53.9 | 5.6e-17 | 1.0e-13 | 51.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s8795_g18893.t1 | gi|602639606|ref|XP_007426622.1| | PREDICTED: bromodomain and PHD finger-containing protein 3 isoform X5 [Python bivittatus] | 0.0 |
| habu1_s8795_g18893.t1 | gi|637346606|ref|XP_008117530.1| | PREDICTED: bromodomain and PHD finger-containing protein 3 isoform X1 [Anolis carolinensis] | 0.0 |
| habu1_s8795_g18893.t1 | gi|591377970|ref|XP_007063544.1| | PREDICTED: bromodomain and PHD finger-containing protein 3 isoform X2 [Chelonia mydas] | 0.0 |
| habu1_s8795_g18893.t1 | gi|602639598|ref|XP_007426618.1| | PREDICTED: bromodomain and PHD finger-containing protein 3 isoform X1 [Python bivittatus] | 0.0 |
| habu1_s8795_g18893.t1 | gi|602639600|ref|XP_007426619.1| | PREDICTED: bromodomain and PHD finger-containing protein 3 isoform X2 [Python bivittatus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 1.4 |
| Venom grand-1 | 1.2 |
| Pit, infrared sensing | 1.6 |
| Nose | 1.1 |
| Brain-1 | 5.9 |
| Eye | 2.1 |
| fetal fibroblast | 1.3 |
| venom gland-2 | 0.9 |
| Brain-2 | 4.5 |
| Spleen | 1.7 |
| Lung | 1.8 |
| Liver | 2.5 |
| Kidney | 2.7 |
| Pancreas | 1.3 |
| Small intestine | 0.8 |
| Large intestine | 1.4 |
| Stomach | 1.3 |
| heart | 4.2 |
| ovary | 8.7 |
| cheek muscle | 5.6 |
Transcript
| Transcript ID | habu1_s8795_g18893.t1 |
|---|---|
| Definition | - |
>habu1_s8795_g18893.t1 gtaaatcgaggactaaaccggtcataagttgaggactaaactggtcgtaagtctaggactacccaaccggtcattttcca acttgctgctatgaggaaacctcggaggaggtcccggcagactttagaaggaagacgttctccttcaccatacagcttga aatgctcacccacccgagagactctgacatacgcccaggctcagcgaatagtggaagttgatattgatggccgtctccat cgcatcagcatttatgatcctctaaagatcatcacagaggatgagctaaccgcccaggacatcacagaatgcaacagcaa caaagaaaacagcgaacaaccactttttccttcaaaatccaggaaaaatcagtgcaaaggcaaaaaaaaagagacatgca ccaaacatgcttctggagcatctttccctctaccacagcccaactttcgcatgattgactctttcagccagctggatgct ccacccttgccttcagcttactatcagtatattgagaaaccacccaaggatgttgatgctgaagtggagtatgatttgga tgaggaggatttggcctggcttgacatgatcaacgaaaaaaggaagaatgatgggtatgggtcaatttccgcagagactt ttgaattgctactggatcgtctggagaaagagtcatatttggagagtcgtaataatggagcccagcagaccatgatagat gaggatgctgtttgttgtgtttgcatggatgatgaatgtcataacagcaatgtcattttgttttgtgacatctgcaactt ggctgtgcaccaggagtgttatggagttccctacatccctgagggacaatggctttgtcgctgctgcctacaatcccctt cgcaccctgttgactgtgtcttgtgtccaaacaaaggtggagcattcaaacagaccagtgatggtcactgggctcatgtt gtttgtgccatctggatcccagaaatttgttttgcaaacactgtgtttctggaacccattgagggaatagaaaacatccc acctgcccgctggaaactaacttgctacatctgcaagcagaagggcatgggagcagctatccagtgccacaaaatgaact gctacactgctttccatgttacctgtgcccagagagctggtctcttcatgaagattgagcccatgagggagaccagcctc aatggcactacgttcactgtgcgcaaaactgctttctgtgaggcgcattcccctcctggcaccatgaaaaaaggacacgc aactactcttcatgaaggagaggaggacattgtaaagaatgagacaatggagaggggcagtcccagaaataagaacaaag taaattggaagcaaaaggtgaaaaaggaaagcagtgcttctgtgcctctgctaatggtcacacagatcccttcttaccgg ctgaataaaatctgcagtggactcaacttccagagaaagaatcagttcatgcagaggctgcacaattattggctattgaa acgtcagtcaagaaatggtgtaccactgatacggaggctacactctcacttacagtcccaaagaaatgcagaactgaagg agcaggatgaaaagactagcgcagtaaaagaagaacttaaatattggcagaaacttcgacatgacctagaaagagcacgg ctgctcattgaattaattcgtaaacgtgagaaactcaaacgtgaacaggtaaagattcagcaagctgctatggagttaca gctcacaccattcaatgttcttatgcgcacaacattggatctactgcaggaaaaagatccagcccagatctttgcagatc ccgtaaacctgagtgaggttccagattacctggaattcatttccaagccaatggatttttctaccatgaggaagaagctg gagtcccaccagtaccaaacactggatgaatttgaagaagattttaacctcatccttgccaattgcatgaggtataattc taaagacacaattttccatcgagcagctgtccggctcagagatcttggaggtgcaatattacgccatgcacgacggcaag ctgagaatattggctttgacccccaagtggggattcatttgcctgaatctccaaagacagaggatttttatcgtttttct tgggaggatgttgacaacattcttgttgctgagaaccgagctcatctttccttggaagtacaactgaaggaactgttgga aaagctggacgtagtgagcaccatgaggtcaagcggtgcccgaacccgtcgtgttcgactcttgaggcgagaaatcaact ctgtcaggcaaaagctgtctcagcagcagagtaaagccgtgccaaatggagaatcggctccatgggaagaaggtctcgaa aaaatgctgcacagtgatgaagacagggagaaagctgtgaccaatggcttcaagaagcatacagaaagtgggtctgattc agaatgtagctctggacggggcagtggtctttcattggacatatgcagtagtccgccaccacataaacgtagccgaggaa agcctgctcttacacgggtcccttttctggatggtgtaaataaagatttggcatatagcaactcaggaagaaacttgctg atgtcatttgaggaacacgctgacctagaacctctggagcttgtgtgggcaaaatgtcgtggctatccttcttacccagc gctgatcattgatcctgagatgccacaagagggcctccttcacaatggagtcccaatccctgtcccccctctggaagtgc taaaattaggtgagcagaagcaagcggagactggagaaaaacttttccttgtccttttctttgacaacaagaggacatgg cagtggcttccacaagaaaaagttcttcctcttggagtagatgacactgtggataaactcaagatgctggaaggacggaa aaccagtatccgcaagtctgtccaggttgcatatgaccgtgcaatgattcacatgagccgcgttcggggagaccatcctt tcgtcacacccaattatctgtaggaaacctgctctacccatcctgtaggaagtaatgtctgcatctgcaggcaaagtgga tcaactatatcctgaggaatatgggattttcctgcctacaggaaaatacaattgccatatttgcattcttag |
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Protein
| Protein ID | habu1_s8795_g18893.t1 |
|---|---|
| Definition | - |
>habu1_s8795_g18893.t1 MRKPRRRSRQTLEGRRSPSPYSLKCSPTRETLTYAQAQRIVEVDIDGRLHRISIYDPLKIITEDELTAQDITECNSNKEN SEQPLFPSKSRKNQCKGKKKETCTKHASGASFPLPQPNFRMIDSFSQLDAPPLPSAYYQYIEKPPKDVDAEVEYDLDEED LAWLDMINEKRKNDGYGSISAETFELLLDRLEKESYLESRNNGAQQTMIDEDAVCCVCMDDECHNSNVILFCDICNLAVH QECYGVPYIPEGQWLCRCCLQSPSHPVDCVLCPNKGGAFKQTSDGHWAHVVCAIWIPEICFANTVFLEPIEGIENIPPAR WKLTCYICKQKGMGAAIQCHKMNCYTAFHVTCAQRAGLFMKIEPMRETSLNGTTFTVRKTAFCEAHSPPGTMKKGHATTL HEGEEDIVKNETMERGSPRNKNKVNWKQKVKKESSASVPLLMVTQIPSYRLNKICSGLNFQRKNQFMQRLHNYWLLKRQS RNGVPLIRRLHSHLQSQRNAELKEQDEKTSAVKEELKYWQKLRHDLERARLLIELIRKREKLKREQVKIQQAAMELQLTP FNVLMRTTLDLLQEKDPAQIFADPVNLSEVPDYLEFISKPMDFSTMRKKLESHQYQTLDEFEEDFNLILANCMRYNSKDT IFHRAAVRLRDLGGAILRHARRQAENIGFDPQVGIHLPESPKTEDFYRFSWEDVDNILVAENRAHLSLEVQLKELLEKLD VVSTMRSSGARTRRVRLLRREINSVRQKLSQQQSKAVPNGESAPWEEGLEKMLHSDEDREKAVTNGFKKHTESGSDSECS SGRGSGLSLDICSSPPPHKRSRGKPALTRVPFLDGVNKDLAYSNSGRNLLMSFEEHADLEPLELVWAKCRGYPSYPALII DPEMPQEGLLHNGVPIPVPPLEVLKLGEQKQAETGEKLFLVLFFDNKRTWQWLPQEKVLPLGVDDTVDKLKMLEGRKTSI RKSVQVAYDRAMIHMSRVRGDHPFVTPNYL |
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