Gene
| Gene Model ID | habu1_s889_g03211 |
|---|---|
| Locus | habu1_scaffold889 : 5083 ... 23325 : - |
| To GenomeBrowser | habu1_scaffold889:5083..23325 |
| Genes list of scaffold | habu1_scaffold889 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cd276 antigen- partial | GO:0005102 GO:0007165 GO:0009897 GO:0016021 GO:0030501 GO:0042102 GO:0042130 GO:0045077 GO:0045078 GO:0045085 GO:0045669 GO:0050728 GO:0050776 GO:0070062 GO:1900042 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s889_g03211.t1 | 1 | 1 | V-set | 42 | 139 | 2.4e-08 | 33.8 | 1.0e-10 | 1.9e-07 | 30.9 |
| habu1_s889_g03211.t1 | 1 | 1 | C2-set_2 | 163 | 242 | 4.1e-09 | 36.2 | 2.5e-11 | 4.7e-08 | 32.8 |
| habu1_s889_g03211.t1 | 1 | 1 | Ig_3 | 164 | 237 | 4.2e-09 | 36.7 | 7.3e-09 | 1.3e-05 | 25.5 |
| habu1_s889_g03211.t1 | 1 | 1 | C1-set | 171 | 242 | 3.0e-07 | 30.3 | 1.0e-08 | 1.9e-05 | 24.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s889_g03211.t1 | gi|602676849|ref|XP_007443879.1| | PREDICTED: CD276 antigen-like, partial [Python bivittatus] | 0.0 |
| habu1_s889_g03211.t1 | gi|637355913|ref|XP_008119226.1| | PREDICTED: CD276 antigen isoform X2 [Anolis carolinensis] | 0.0 |
| habu1_s889_g03211.t1 | gi|637355908|ref|XP_008119225.1| | PREDICTED: CD276 antigen isoform X1 [Anolis carolinensis] | 0.0 |
| habu1_s889_g03211.t1 | gi|694665691|ref|XP_009487400.1| | PREDICTED: CD276 antigen [Pelecanus crispus] | 0.0 |
| habu1_s889_g03211.t1 | gi|704560935|ref|XP_010182700.1| | PREDICTED: CD276 antigen [Mesitornis unicolor] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 20.2 |
| Venom grand-1 | 11.4 |
| Pit, infrared sensing | 20.7 |
| Nose | 9.4 |
| Brain-1 | 2.8 |
| Eye | 5.2 |
| fetal fibroblast | 29.5 |
| venom gland-2 | 10.4 |
| Brain-2 | 2.8 |
| Spleen | 8.5 |
| Lung | 12.5 |
| Liver | 19.8 |
| Kidney | 9.2 |
| Pancreas | 11.8 |
| Small intestine | 10.4 |
| Large intestine | 10.0 |
| Stomach | 9.8 |
| heart | 9.4 |
| ovary | 15.8 |
| cheek muscle | 19.0 |
Transcript
| Transcript ID | habu1_s889_g03211.t1 |
|---|---|
| Definition | - |
>habu1_s889_g03211.t1 caaactggccggcgcaacttagacggactttggcttgcgggctagggaagagggtcgctgctttctcttgaccatgtgcc ccaacacttgcgggcctcctggctcccagaactcttccgttgcaaggaaactctgtgtccagttgctgcttctggggtct ctcctgcccacctggctaggagccgtggaaatcaaggtctccgaagaccccgtggtggccctcgttggccatgacgctat tctccactgttccttctcgccggaggccaatttcagcctgaacgacctcagcctcttctggcaggtgacggacaccaacc agctggtgcacggcttcacggaaggtcaagagcagccggcgtaccagggcagcacttacgccaaccgcaccgccctcttc tatgaccagctggcccgcggcaacatgtccctgcttctgcgccgagtgcagatctccgacgaagggagcttcacctgctt cgtcaaagtgcgggacttcagccgggcagctgttactctgcaaatggcagctatctactccaagccgaacatgaatttgg aacccagcaagaacctgaagccgggtgacctggtcaaagtgaggtgccacagcttttcgggataccctgaagctattgtg ctctggcaagatagccacggcaacaacatcactgagaatatcaccacctcccaggtggccaatgagcagggcctctttga tgtccagagtaccctccaggtgctgcttgaacctaacagcacctacagttgcctgatcaagaatcctttgcttcaacagt tgacccacgcttccgtcaccatcacaggacaacaccttctgtttccagcagtagctctctgggtcacggtggggctgtcg atttgccttgtcatccttctgatcatcctggcgtacgtgtgtcagaagaaaatccgtcaaagttgcaaagaggagaaagc gaaagccggaatagaggagttaaatgatggagaaggctccaagacagatatggctgaagaaattgattgacgataaggga gggcaaagcaacagccacctctcaaggctgaagttggcaagccaagccctgagatcttcctccagcatagacaatagaag atgcaagagagacttgcctggtgttcttccttgaagcctacaactcaaaacctacagatgccttcttacagattcttgcc ttctccacagacctggccctcccaccgtggactcagaaagaggctggaactccttactccttgccagctctatccttgcc ccaaggttgacataggcaaggtccttcttcacccaacatatctaagactatttattttcctccccattggccttacaggg ccaaaaatgatctctgtctgcccagtgatcataatttggatccacacgaagatcccacaagcagggtagagaacatatcc agctcagcacttctatttcgatggtcgttcttgtcatcttctacctgcaatttttttccccatggggattcgccctctgg attttatgccaccgcacctgggaacagttttcctttctcgttgcagagtttttgccttctccaagatgcaaaattagtct gggatatggccaagagaccatctcattatctctggcatctcaagaaagtgtgcctaaaacttttttctaccagaaacttc caaaaactgtggccatcagagagggcataagtgaaacggatgcataatctaacgtcttcttttatagtcgtcgctacaaa cattataaacattaggaataggattcttttctctttttttttctttttaaaaaataacttagggggggaaaaaaataaca gaagtgcctttgagcagttttgggaattgccttccagcgagagacacttgtgatgcacaaagaaaacctcacagggaatg gactgtattctttctttaagctttctttaaaacaattaaaacatcagcaacaaccaatggaggtgaaaatctgactttgc cgatatgctcatgtttaccttgaaatcaaccccagttcattgagtggggcttacttttaagtgtgcctttagattaaagc cgaaaggccttgtctgtatttggtcagaggtctctgttttgcttcccaagcctcagaaatgtcagtctttgattctgagc gctgagaatgccatagaatgtgatgtctgctctctggttatgtcttctgtggctctgaagaggatcttgaggcgtagtaa tagggaattcaaattatgttgagcagttgttgcacatggtagggggcaaatctggaaccgccaggaaaacagtttcaggg aaagacgaaattaaatttgaacaaagactgtgggaggatgcataggaaaacagtgaaaaatcttacgggctctacttcct tcgtatttgaaatcctaagatcatcaaccagagcctgatagaaaagctacagttttcagaatgaattatttcagtgcgca ggaatttcatctcgagtccctgaggtcaccaagtagaactattgctttgaatgttaatacagccaacaaacaggatcctt aacccacacaagatggaggcatgaatgagaaaaggattaaattcccaagtcttcgcctgattggctgagctcctctcctc tcctctcctctcctctcctctcctctcctctcctcaataaaggtaaaggtttccttgtccagc |
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Protein
| Protein ID | habu1_s889_g03211.t1 |
|---|---|
| Definition | - |
>habu1_s889_g03211.t1 MCPNTCGPPGSQNSSVARKLCVQLLLLGSLLPTWLGAVEIKVSEDPVVALVGHDAILHCSFSPEANFSLNDLSLFWQVTD TNQLVHGFTEGQEQPAYQGSTYANRTALFYDQLARGNMSLLLRRVQISDEGSFTCFVKVRDFSRAAVTLQMAAIYSKPNM NLEPSKNLKPGDLVKVRCHSFSGYPEAIVLWQDSHGNNITENITTSQVANEQGLFDVQSTLQVLLEPNSTYSCLIKNPLL QQLTHASVTITGQHLLFPAVALWVTVGLSICLVILLIILAYVCQKKIRQSCKEEKAKAGIEELNDGEGSKTDMAEEID |
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