Gene
| Gene Model ID | habu1_s889_g03213 |
|---|---|
| Locus | habu1_scaffold889 : 70896 ... 131158 : + |
| To GenomeBrowser | habu1_scaffold889:70896..131158 |
| Genes list of scaffold | habu1_scaffold889 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| potassium sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | GO:0001518 GO:0002027 GO:0005222 GO:0005248 GO:0005249 GO:0005622 GO:0008076 GO:0017071 GO:0030552 GO:0035725 GO:0042802 GO:0071320 GO:0071321 GO:0071805 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s889_g03213.t1 | 1 | 1 | Ion_trans_N | 1 | 25 | 9.1e-08 | 31.3 | 3.7e-11 | 9.1e-08 | 31.3 |
| habu1_s889_g03213.t1 | 1 | 1 | Ion_trans | 29 | 243 | 6.0e-19 | 68.0 | 4.1e-22 | 1.0e-18 | 67.3 |
| habu1_s889_g03213.t1 | 1 | 1 | cNMP_binding | 346 | 429 | 4.4e-21 | 74.5 | 5.5e-24 | 1.4e-20 | 72.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s889_g03213.t1 | gi|602673645|ref|XP_007442319.1| | PREDICTED: potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4-like [Python bivittatus] | 0.0 |
| habu1_s889_g03213.t1 | gi|729746832|ref|XP_010569892.1| | PREDICTED: potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 [Haliaeetus leucocephalus] | 0.0 |
| habu1_s889_g03213.t1 | gi|699687110|ref|XP_009904176.1| | PREDICTED: potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 [Picoides pubescens] | 0.0 |
| habu1_s889_g03213.t1 | gi|694853032|ref|XP_009467913.1| | PREDICTED: potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 [Nipponia nippon] | 0.0 |
| habu1_s889_g03213.t1 | gi|513200722|ref|XP_004943719.1| | PREDICTED: potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 isoform X10 [Gallus gallus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.1 |
| Venom grand-1 | 0.1 |
| Pit, infrared sensing | 0.2 |
| Nose | 0.5 |
| Brain-1 | 0.9 |
| Eye | 0.3 |
| fetal fibroblast | 0.1 |
| venom gland-2 | 0.2 |
| Brain-2 | 0.9 |
| Spleen | 0.2 |
| Lung | 0.3 |
| Liver | 0.2 |
| Kidney | 0.2 |
| Pancreas | 0.2 |
| Small intestine | 0.2 |
| Large intestine | 0.4 |
| Stomach | 0.2 |
| heart | 0.2 |
| ovary | 0.1 |
| cheek muscle | 0.1 |
Transcript
| Transcript ID | habu1_s889_g03213.t1 |
|---|---|
| Definition | - |
>habu1_s889_g03213.t1 gttcggcgctctgctgcaacccggcgtgaacaaattctccctgcggatgttcggcagccagaaggcggtggagcgggagc aggagagggtcaagtcggccggcttctggatcatccacccttacagcgatttcaggtctctatcttgctctctagattct attgggacctcaccatgttgctcctcatggttggaaatctgatcatcatcccagtaggcatcaccttcttcaaggatgag aacaccaccccgtggattgtcttcaacgtggtctcagacaccttcttcctcattgacttggtcctcaatttccgcacggg gattgtggtggaggacaacacggagatcatccttgacccccagaggattaagatgaagtatctcaaaagctggtttgtgg tggattttatctcatccatcccagtagactacattttcctgattgtggagacccgcatcgattcggaggtatataagaca gcccgagctctgcggattgtccgttttaccaaaatcctcagcctcttgagactcctgagactgtctaggctcatacggta tattcatcaatgggaagagatcttccatatgacctatgacctggccagtgccgtggtacggatcgtcaacttgatcggca tgatgctgttgctgtgccattgggatggctgtctccagttcctggtgcccatgctccaagaatttccgggggactgttgg gtgtcgctgaaccgcatggtgaatgattcctgggggaagcaatactcctatgcgctgttcaaggctatgagtcacatgct gtgtatcggctatggacagcaagccccagtgggcatgtctgacgtgtggctcacaatgttaagcatgatcgttggtgcca cctgctatgccatgttcatcggccacgccacggcccttatccagtctctggattcctcacggcgacagtatcaggagaag tacaagcaagtcgaacaatacatgtctttccataaacttccagctgagatgcgccagagaatacatgactactatgaaca tcggtatcagggcaaaatgtttgatgaagagagcatcctgggagaactaagtgagcccctcaaagaggagatcatcaact ttaactgcaggaaactggtggcttccatgcctctattcgccaatgccgaccccaattttgttacctccatgctgaccaag ctgcgttttgaggtcttccagccaggggactacataatccgagaaggcaccatcgggaagaagatgtacttcatccaaca tggggtggtgagtgtgctcaccaaaggcaacaaggagaccaagctggccgacggttcctactttggagaaatttgcctgc tgactcgtggccgacgcacagccagcgtgagagctgacacgtactgccgtctctactcgctttcggtggacaacttcaat gaagtattagaggaatatcccatgatgagaagggcctttgaaacagtggcactggatagattggaccgcattggtaagaa gaactccatcctcctccacaaggtccaacacgacctcaactcgggtgtcttcaattaccaggagaacgagatcatccaac aaattgtgcagcatgacagagaaatggcccactgcgcccataacggttatgggatcaaaattcagactcttggcaaccag catgtaatttacaaccgttccgggatcccaagattgccaattacgaccttgacgattggtttccgaccagcaaaaggcaa tggagggaaactggacttgcttaacggcaatgattcgcttaacaaccatggcaaaaaggtcatcaatgggggtgtggctc gcttaacaggggccctgcttagcaatgggaattctattgcagattttgccactgtttggttgttttgctgcaaaccccga aaagccgattctgtgtctatttctccagctagcagtcaattcatcgaccacatagatgtcacagagcacatcatgagaaa ggcagggctagatgaatcaaaagttggaattaagattgccaggagaaatatcaacaatctaagatatgcagatgatacca ctctaatggcagaaagtgaagaggaactaaagagcctcattaagaaaaccaaaatcatggcatccggccctctcaattcc tggcaaatagatggggaagaaatggaggtagtgacagattttattttcctggactccaagatcacctcagatggggactg cagccaagaaattaaaagacgtttgctcctggagaggaaagctatggcaaatctagacagcatactaaaaagcagagaca tcaccctgccaacaaaagtgcgtatagtcaaggccatggttttcccagttgcaatgtatggatgtgaaagttggaccata agaaaggctgagcgacaaagaatggaggcctttgaactctggtgctggagaagactcctgcgagtcccttggactgcaag gcgatccaaccggtcagtcctagaggagatcaaccctgactgctctttagaaggccagatcctgaagttgaaactcaagt actttggccacctaatgagaaggaaggactcactggagaagagcctgatgctgggaaagatggagggcaatataagaagg ggatgacagagaatgaggtggctgggtggagtcactgaagcagtaggcgggagcttaaatggactccagaagatggtaga ggacaggaagacctggaggaacgttgtccatggggtcgcgatgggtcggacacgatttcgcaattaacaacaacgatgc |
|
Protein
| Protein ID | habu1_s889_g03213.t1 |
|---|---|
| Definition | - |
>habu1_s889_g03213.t1 MLLLMVGNLIIIPVGITFFKDENTTPWIVFNVVSDTFFLIDLVLNFRTGIVVEDNTEIILDPQRIKMKYLKSWFVVDFIS SIPVDYIFLIVETRIDSEVYKTARALRIVRFTKILSLLRLLRLSRLIRYIHQWEEIFHMTYDLASAVVRIVNLIGMMLLL CHWDGCLQFLVPMLQEFPGDCWVSLNRMVNDSWGKQYSYALFKAMSHMLCIGYGQQAPVGMSDVWLTMLSMIVGATCYAM FIGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPAEMRQRIHDYYEHRYQGKMFDEESILGELSEPLKEEIINFNCRK LVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKETKLADGSYFGEICLLTRGR RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVALDRLDRIGKKNSILLHKVQHDLNSGVFNYQENEIIQQIVQH DREMAHCAHNGYGIKIQTLGNQHVIYNRSGIPRLPITTLTIGFRPAKGNGGKLDLLNGNDSLNNHGKKVINGGVARLTGA LLSNGNSIADFATVWLFCCKPRKADSVSISPASSQFIDHIDVTEHIMRKAGLDESKVGIKIARRNINNLRYADDTTLMAE SEEELKSLIKKTKIMASGPLNSWQIDGEEMEVVTDFIFLDSKITSDGDCSQEIKRRLLLERKAMANLDSILKSRDITLPT KVRIVKAMVFPVAMYGCESWTIRKAERQRMEAFELWCWRRLLRVPWTARRSNRSVLEEINPDCSLEGQILKLKLKYFGHL MRRKDSLEKSLMLGKMEGNIRRG |
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