Gene
| Gene Model ID | habu1_s889_g03218 |
|---|---|
| Locus | habu1_scaffold889 : 313526 ... 351535 : - |
| To GenomeBrowser | habu1_scaffold889:313526..351535 |
| Genes list of scaffold | habu1_scaffold889 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| bardet-biedl syndrome 4 protein isoform x1 | GO:0000242 GO:0000281 GO:0001103 GO:0001843 GO:0003085 GO:0003777 GO:0005814 GO:0005874 GO:0007286 GO:0007608 GO:0010629 GO:0016358 GO:0019216 GO:0021756 GO:0021766 GO:0021987 GO:0030534 GO:0031513 GO:0031514 GO:0032465 GO:0034451 GO:0034452 GO:0034454 GO:0034464 GO:0035058 GO:0036064 GO:0038108 GO:0040018 GO:0043014 GO:0045298 GO:0045444 GO:0045494 GO:0045724 GO:0046548 GO:0048487 GO:0048854 GO:0051297 GO:0051457 GO:0060170 GO:0060296 GO:0071539 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s889_g03218.t1 | 3 | 1 | TPR_12 | 72 | 129 | 3.7e-19 | 68.4 | 8.7e-07 | 0.00058 | 19.7 |
| habu1_s889_g03218.t1 | 4 | 1 | TPR_11 | 99 | 163 | 1.10002e-42 | 143.4 | 3.1e-13 | 2.1e-10 | 40.1 |
| habu1_s889_g03218.t1 | 2 | 1 | TPR_14 | 102 | 141 | 1.3e-18 | 65.8 | 6.2e-06 | 0.0042 | 17.6 |
| habu1_s889_g03218.t1 | 1 | 1 | TPR_16 | 105 | 161 | 2.6e-20 | 72.5 | 1.6e-07 | 0.00011 | 22.8 |
| habu1_s889_g03218.t1 | 2 | 1 | TPR_19 | 110 | 171 | 2.2e-19 | 69.5 | 1.4e-10 | 9.4e-08 | 32.2 |
| habu1_s889_g03218.t1 | 2 | 1 | TPR_2 | 134 | 165 | 5.7e-31 | 103.9 | 5.9e-08 | 4.0e-05 | 23.2 |
| habu1_s889_g03218.t1 | 3 | 1 | TPR_1 | 134 | 166 | 5.1e-29 | 98.6 | 7.7e-07 | 0.00052 | 19.5 |
| habu1_s889_g03218.t1 | 3 | 2 | TPR_12 | 135 | 195 | 3.7e-19 | 68.4 | 2.5e-09 | 1.7e-06 | 27.8 |
| habu1_s889_g03218.t1 | 3 | 1 | TPR_8 | 136 | 164 | 3.0e-26 | 89.1 | 1.4e-06 | 0.00094 | 18.8 |
| habu1_s889_g03218.t1 | 2 | 1 | Apc3 | 165 | 225 | 1.8e-11 | 44.0 | 7.1e-06 | 0.0048 | 17.0 |
| habu1_s889_g03218.t1 | 4 | 2 | TPR_11 | 168 | 231 | 1.10002e-42 | 143.4 | 8.3e-13 | 5.6e-10 | 38.7 |
| habu1_s889_g03218.t1 | 3 | 2 | TPR_1 | 168 | 199 | 5.1e-29 | 98.6 | 5.0e-06 | 0.0034 | 16.9 |
| habu1_s889_g03218.t1 | 2 | 2 | TPR_14 | 168 | 207 | 1.3e-18 | 65.8 | 4.0e-06 | 0.0027 | 18.1 |
| habu1_s889_g03218.t1 | 2 | 2 | TPR_2 | 169 | 199 | 5.7e-31 | 103.9 | 1.7e-06 | 0.0012 | 18.6 |
| habu1_s889_g03218.t1 | 3 | 2 | TPR_8 | 169 | 199 | 3.0e-26 | 89.1 | 5.4e-06 | 0.0036 | 16.9 |
| habu1_s889_g03218.t1 | 2 | 2 | TPR_19 | 177 | 239 | 2.2e-19 | 69.5 | 4.2e-07 | 0.00029 | 21.1 |
| habu1_s889_g03218.t1 | 4 | 3 | TPR_11 | 267 | 333 | 1.10002e-42 | 143.4 | 6.2e-14 | 4.2e-11 | 42.3 |
| habu1_s889_g03218.t1 | 3 | 3 | TPR_1 | 270 | 294 | 5.1e-29 | 98.6 | 4.4e-07 | 0.00029 | 20.2 |
| habu1_s889_g03218.t1 | 3 | 3 | TPR_8 | 270 | 299 | 3.0e-26 | 89.1 | 9.5e-07 | 0.00064 | 19.3 |
| habu1_s889_g03218.t1 | 3 | 3 | TPR_12 | 270 | 325 | 3.7e-19 | 68.4 | 2.6e-06 | 0.0017 | 18.2 |
| habu1_s889_g03218.t1 | 1 | 1 | TPR_9 | 279 | 341 | 3.2e-14 | 52.5 | 2.9e-06 | 0.002 | 17.9 |
| habu1_s889_g03218.t1 | 2 | 2 | Apc3 | 282 | 362 | 1.8e-11 | 44.0 | 1.9e-06 | 0.0013 | 18.8 |
| habu1_s889_g03218.t1 | 4 | 4 | TPR_11 | 335 | 396 | 1.10002e-42 | 143.4 | 5.3e-08 | 3.6e-05 | 23.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s889_g03218.t1 | gi|602654079|ref|XP_007432887.1| | PREDICTED: Bardet-Biedl syndrome 4 protein homolog [Python bivittatus] | 0.0 |
| habu1_s889_g03218.t1 | gi|637368160|ref|XP_008121522.1| | PREDICTED: Bardet-Biedl syndrome 4 protein isoform X1 [Anolis carolinensis] | 0.0 |
| habu1_s889_g03218.t1 | gi|637368164|ref|XP_008121523.1| | PREDICTED: Bardet-Biedl syndrome 4 protein isoform X2 [Anolis carolinensis] | 0.0 |
| habu1_s889_g03218.t1 | gi|543354545|ref|XP_005521772.1| | PREDICTED: Bardet-Biedl syndrome 4 protein [Pseudopodoces humilis] | 0.0 |
| habu1_s889_g03218.t1 | gi|558158276|ref|XP_006122245.1| | PREDICTED: Bardet-Biedl syndrome 4 protein isoform X1 [Pelodiscus sinensis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 4.2 |
| Venom grand-1 | 6.0 |
| Pit, infrared sensing | 6.2 |
| Nose | 8.3 |
| Brain-1 | 4.8 |
| Eye | 7.0 |
| fetal fibroblast | 2.3 |
| venom gland-2 | 3.5 |
| Brain-2 | 3.8 |
| Spleen | 2.6 |
| Lung | 8.8 |
| Liver | 1.8 |
| Kidney | 5.2 |
| Pancreas | 1.9 |
| Small intestine | 2.7 |
| Large intestine | 2.7 |
| Stomach | 2.1 |
| heart | 4.3 |
| ovary | 1.9 |
| cheek muscle | 1.8 |
Transcript
| Transcript ID | habu1_s889_g03218.t1 |
|---|---|
| Definition | - |
>habu1_s889_g03218.t1 cagggttggagtttagagggaccggaagctctgttaccgtggcaacaagatacccggcgccctttccgtcgattacttcc ggggtggctggtcacctaggcaacggacagctggcggtggcttgctcggagctgaggcgccatggcggaggtgacggctc ggccgactgcatcagcagcaacagaacttcccagagccagatcaggaagagggcccgaccttcccattctggagaagagg aactggctgatccacttgtactacgtccacaaagattacgatgcgtgtaagattgctatcaaagagcaactgcaggaaac ccaaggaatgtgtgaatacgccgtctacgttcaagctttgatctttcgcttggaagggaaaattcacgaatctctggagc ttttccagacttgtgctattctcaggcctcgatgtgcagacaacctcaagcaggtggcccgttccctgttccttctgggc aagcacaaagcagctattgaagtctacaacgatgcggctcaacacaacgagaaggactgggagatctttcataacttggg cgtctgctacatgcagctgaaatatttcaacaaggccaaagatcaactgaacaacgccttgcagctcaaccgacatgacc tgacatacatgacgctggggaggattcacctgatggagggggaaagagatgcagccattgaaatctataaaaaggcagtg gaattctcccctgaaaacacagagctccttaccattctgggcttgctttacctcgagcttgagatttatcagaaagcctt tgaataccttggaaatgcactcacatttgatccctgcaactataaggccattttagcagctggcagtatgatgcaaaccc atggggactttgacatggctctcagcaagtaccggaccgtggcttgtaccgttcctgagagccctctgctctggaacaac atcggtatgtgcttttttggcaaaaagaaatacgtggcggctatcagctgcctgaaacgggcaaactaccttgcaccctt tgattggaagatcctgtacaatcttgggctggtccatctgacaatgcaccagtatgcttccgccttccacttcatcagcg cagctgtccatctccagccaaagttggcagaactttacatgttgttagcagttgccctgacaaatcttgaagatcttgaa aatgcaaggctagcctatcagaaagcttcatcactggacacatgcaacccactcatcagtctgaatcacgcaatcctgct atacaatcaaggagacaagacgggggctgttgctcagtactatgagatgcaaagaaaggtccatgccttaaaagagagca ccctggattttgaccccgagatggtggacattgcccagagactgggcacttccttacagcttggagaggtggcaatctgg gctaaacctgggaaagactcgaaaccgaagccgcgaggcaccgcacccagcgcacagccattgggttccaatcaagctct gggacaggccatgtcctctgcagctgggtatgcaaagacaatgagccgagttcttggaagttcaactcatgtggcaaagg ttccttccttacctttggagcctaaacccaagcaaccgacccccgaggaacttccatctactctaaaatcacaggaacaa gttcaacccgtcgaacaagcggagcagtcttgaagagagggccaacctggaactgctcgtagagcgccgtgttgaaccta ccgggtgcaatagggacaaggcgcatttagtatcctacaaactttgcgccagaccaaagagtgcagcagtcctgtcgcac accattagccgatgagatattcggaggttgcgttgttcccttaacattccacacgtagactaatgaaagatgaagagagg gacacggtttgagtagctttccctggaagccattggaccttcataacaggaagagaagtgagttgattatgtttctacta agaggtgtctctagattttgagaatatagccctttctaatatttttctactgatgccgagttactttttggtagcatttc gagccgtacgagctgtggcggcacagtggttagaatgcagcattgcaggctgactctgcccactgccaggagttcgatcc tgaccggctcaaggctgacccggccttccatccttccgaggttggtaaaatgaggacccagattgttgggggcgataggc tgactctgtaaaccgcttagagagggctgtaaagcactgtggggcggtatataagtctaagagctatggctattgctatt tctgaactcatgacccagctgttctgttgaaccataaccggaggcatctactcgtatattcctagacaagtaacttgttt gggattgttgaacctgggtagaatccagctacttttgctgcaaatgcttttgtaggacttctgtgtttcctgccactttt gaacctagtggaaccccctaagaggagcagattccgtcctcttgccaatcacttggtggtggaatttactactagatgac atagtagtaagttatgtgctcgcttcggcagaatatatactaaaattgagaagtacgtatattggatggggttaaggttt ttttgtgtaaataaaaatgtgatgagttgattgaaat |
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Protein
| Protein ID | habu1_s889_g03218.t1 |
|---|---|
| Definition | - |
>habu1_s889_g03218.t1 MAEVTARPTASAATELPRARSGRGPDLPILEKRNWLIHLYYVHKDYDACKIAIKEQLQETQGMCEYAVYVQALIFRLEGK IHESLELFQTCAILRPRCADNLKQVARSLFLLGKHKAAIEVYNDAAQHNEKDWEIFHNLGVCYMQLKYFNKAKDQLNNAL QLNRHDLTYMTLGRIHLMEGERDAAIEIYKKAVEFSPENTELLTILGLLYLELEIYQKAFEYLGNALTFDPCNYKAILAA GSMMQTHGDFDMALSKYRTVACTVPESPLLWNNIGMCFFGKKKYVAAISCLKRANYLAPFDWKILYNLGLVHLTMHQYAS AFHFISAAVHLQPKLAELYMLLAVALTNLEDLENARLAYQKASSLDTCNPLISLNHAILLYNQGDKTGAVAQYYEMQRKV HALKESTLDFDPEMVDIAQRLGTSLQLGEVAIWAKPGKDSKPKPRGTAPSAQPLGSNQALGQAMSSAAGYAKTMSRVLGS STHVAKVPSLPLEPKPKQPTPEELPSTLKSQEQVQPVEQAEQS |
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