Gene
| Gene Model ID | habu1_s889_g03222 |
|---|---|
| Locus | habu1_scaffold889 : 454870 ... 573432 : + |
| To GenomeBrowser | habu1_scaffold889:454870..573432 |
| Genes list of scaffold | habu1_scaffold889 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cugbp elav-like family member 4-like | GO:0000166 GO:0001505 GO:0003676 GO:0005737 GO:0071625 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s889_g03222.t3 | 3 | 1 | RRM_1 | 25 | 92 | 7.50003e-41 | 137.6 | 4.1e-18 | 2.0e-14 | 52.9 |
| habu1_s889_g03222.t3 | 2 | 1 | RRM_6 | 25 | 87 | 1.5e-24 | 85.7 | 1.1e-10 | 5.2e-07 | 29.5 |
| habu1_s889_g03222.t3 | 3 | 1 | RRM_5 | 39 | 102 | 6.5e-22 | 77.1 | 7.5e-09 | 3.7e-05 | 23.4 |
| habu1_s889_g03222.t3 | 3 | 2 | RRM_1 | 106 | 132 | 7.50003e-41 | 137.6 | 4.7e-07 | 0.0023 | 17.5 |
| habu1_s889_g03222.t3 | 3 | 2 | RRM_5 | 108 | 132 | 6.5e-22 | 77.1 | 1.8e-07 | 0.00089 | 19.0 |
| habu1_s889_g03222.t3 | 3 | 3 | RRM_1 | 336 | 405 | 7.50003e-41 | 137.6 | 2.0e-21 | 9.8e-18 | 63.5 |
| habu1_s889_g03222.t3 | 2 | 2 | RRM_6 | 336 | 406 | 1.5e-24 | 85.7 | 5.6e-15 | 2.8e-11 | 43.2 |
| habu1_s889_g03222.t3 | 3 | 3 | RRM_5 | 350 | 409 | 6.5e-22 | 77.1 | 3.0e-11 | 1.5e-07 | 31.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s889_g03222.t3 | gi|513200663|ref|XP_004943704.1| | PREDICTED: CUGBP Elav-like family member 4 isoform X12 [Gallus gallus] | 0.0 |
| habu1_s889_g03222.t3 | gi|686601712|ref|XP_009277151.1| | PREDICTED: CUGBP Elav-like family member 6 isoform X3 [Aptenodytes forsteri] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.0 |
| Venom grand-1 | 0.0 |
| Pit, infrared sensing | 0.0 |
| Nose | 0.9 |
| Brain-1 | 12.9 |
| Eye | 1.7 |
| fetal fibroblast | 0.7 |
| venom gland-2 | 0.0 |
| Brain-2 | 11.8 |
| Spleen | 0.4 |
| Lung | 0.0 |
| Liver | 0.0 |
| Kidney | 0.0 |
| Pancreas | 0.3 |
| Small intestine | 0.0 |
| Large intestine | 0.2 |
| Stomach | 0.1 |
| heart | 0.0 |
| ovary | 0.2 |
| cheek muscle | 0.0 |
Transcript
| Transcript ID | habu1_s889_g03222.t1 |
|---|---|
| Definition | - |
>habu1_s889_g03222.t1 ggcgaaatacattggggccattcatctcaaagtcacgagatcctggggtctcgggagatgattggcacaagactgctttc tgctaaccgtgatgaatcgtccaatccaagtgaaaccagcagatagcgaaggccggggagaagacaggaagctctttgta ggcatgttggggaaacaacaaagtgaggacgatgtccggcgactctttgaacccttcggacagattgaagaatgcaccat cctccgaggccctgatggagccagtaaaggatgtgcctttgtcaaatacggaagccacgcagaagctcaagccgccatta gcactctccatgggagtcagaccatgccgggtgcatcctccagcttagttgtgaagtttgccgacacagacaaggaacga actctgcggcggatgcatcagatggcaggacagctgggcatctttaatcccatgacgatccagtttggagcctatggagc atacacacaagcgataatgcagcagcaggcagcgctcatggctgctgcacaaggaagttgcctcaaccccatggcagcca tcgcggcagcacagatgcagcagatggctgccttcaacgtgagcggcttggtggcggcttccatgacaccctcatcaggt acaagcacacctccagggatcagcgcagctccagtccccagcatagctacacccattggggtcaatgggtttagccctct cccaccacagactaacggacagccagcatcggaaaccatttacaccaatgggatccatccgtacccagctcaaagtccca ccgtggcagaccctctgcaacaagcctacgcaggcatgcagcactatgcagcagcatatccagccgcctatgcaccaatc agccaagccttcccacagcaaactcccatcatcccccagcaacagagagaaggtcctgaaggctgtaacctcttcattta tcacctgccccaagagtttggcgatgcagaactcatgcagatgttccttccttttggcagcgtcatctctgccaaagtct ttgttgatcgtgccaccaaccaaagtaaatgctttggtttcgtcagttttgacaatccaactagtgcccaggcagccatt caagccatgaacggcttccagatcggcatgaagaggctaaaggtccaattaaagaggccaaaagatgcaaatcgacccta ctgatccctgttcaccccggctcggaaaacagaccaggccaatcatagctccaaggatgaccccacagttgcctagcaac cctctagctgttatgggaggtccaaacacaaaactctcccttccaaattatctgaaactattggatgccacgcggcatac gaagagtattccccttgtcccatgtgccgtttccagaacttgttaactttctttgc |
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| Transcript ID | habu1_s889_g03222.t2 |
| Definition | - |
>habu1_s889_g03222.t2 ccgctttcagcaccacgaacagcgccgcgaggatgaacgggctgacggcgccggcgcccggcccggggggctccatcgcc atgaaggaccacgatgccatcaagctcttcatcgggcagatcccgcgcaacctggaggagagcgacctcaagcccctctt cgaggaattcggcaagatctacgaactcaccgtgctcaaggatcgcttcaccggcatgcacaaaggttgtgcctttctta catactgtgcccgggactcagccctaaaagctcagagtgcactccacgaacagaagacactgcctgggatgaatcgtcca atccaagtgaaaccagcagatagcgaaggccggggagaagacaggaagctctttgtaggcatgttggggaaacaacaaag tgaggacgatgtccggcgactctttgaacccttcggacagattgaagaatgcaccatcctccgaggccctgatggagcca gtaaaggatgtgcctttgtcaaatacggaagccacgcagaagctcaagccgccattagcactctccatgggagtcagacc atgccgggtgcatcctccagcttagttgtgaagtttgccgacacagacaaggaacgaactctgcggcggatgcatcagat ggcaggacagctgggcatctttaatcccatgacgatccagtttggagcctatggagcatacacacaagcgataatgcagc agcaggcagcgctcatggctgctgcacaaggaagttgcctcaaccccatggcagccatcgcggcagcacagatgcagcag atggctgccttcaacgtgagcggcttggtggcggcttccatgacaccctcatcaggtacaagcacacctccagggatcag cgcagctccagtccccagcatagctacacccattggggtcaatgggtttagccctctcccaccacagactaacggacagc cagcatcggaaaccatttacaccaatgggatccatccgtacccagctcaaagtcccaccgtggcagaccctctgcaacaa gcctacgcaggcatgcagcactatgcagcagcatatccagccgcctatgcaccaatcagccaagccttcccacagcaaac tcccatcatcccccagcaacagagagaaggtcctgaaggctgtaacctcttcatttatcacctgccccaagagtttggcg atgcagaactcatgcagatgttccttccttttggcagcgtcatctctgccaaagtctttgttgatcgtgccaccaaccaa agtaaatgctttggtttcgtcagttttgacaatccaactagtgcccaggcagccattcaagccatgaacggcttccagat cggcatgaagaggctaaaggtccaattaaagaggccaaaagatgcaaatcgaccctactgatccctgttcaccccggctc ggaaaacagaccaggccaatcatagctccaaggatgaccccacagttgcctagcaaccctctagctgttatgggaggtcc aaacacaaaactctcccttccaaattatctgaaactattggatgccacgcggcatacgaagagtattccccttgtcccat gtgccgtttccagaacttgttaactttctttgc |
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| Transcript ID | habu1_s889_g03222.t3 |
| Definition | - |
>habu1_s889_g03222.t3 ccgctttcagcaccacgaacagcgccgcgaggatgaacgggctgacggcgccggcgcccggcccggggggctccatcgcc atgaaggaccacgatgccatcaagctcttcatcgggcagatcccgcgcaacctggaggagagcgacctcaagcccctctt cgaggaattcggcaagatctacgaactcaccgtgctcaaggatcgcttcaccggcatgcacaaaggttgtgcctttctta catactgtgcccgggactcagccctaaaagctcagagtgcactccacgaacagaagacactgcctgggatgaatcgtcca atccaagtgaaaccagcagatagcgaaggccggggaggatgtgcctttgtcaaatacggaagccacgcagaagctcaagc cgccattagcactctccatgggagtcagaccatgccgggtgcatcctccagcttagttgtgaagtttgccgacacagaca aggaacgaactctgcggcggatgcatcagatggcaggacagctgggcatctttaatcccatgacgatccagtttggagcc tatggagcatacacacaagcgataatgcagcagcaggcagcgctcatggctgctgcacaaggaagttgcctcaaccccat ggcagccatcgcggcagcacagatgcagcagatggctgccttcaacgtgagcggcttggtggcggcttccatgacaccct catcaggtacaagcacacctccagggatcagcgcagctccagtccccagcatagctacacccattggggtcaatgggttt agccctctcccaccacagactaacggacagccagcatcggaaaccatttacaccaatgggatccatccgtacccagctca aagtcccaccgtggcagaccctctgcaacaagcctacgcaggcatgcagcactatgcagcagcatatccagccgcctatg caccaatcagccaagccttcccacagcaaactcccatcatcccccagcaacagagagaaggtcctgaaggctgtaacctc ttcatttatcacctgccccaagagtttggcgatgcagaactcatgcagatgttccttccttttggcagcgtcatctctgc caaagtctttgttgatcgtgccaccaaccaaagtaaatgctttggtttcgtcagttttgacaatccaactagtgcccagg cagccattcaagccatgaacggcttccagatcggcatgaagaggctaaaggtccaattaaagaggccaaaagatgcaaat cgaccctactgatccctgttcaccccggctcggaaaacagaccaggccaatcatagctccaaggatgaccccacagttgc ctagcaaccctctagctgttatgggaggtccaaacacaaaactctcccttccaaattatctgaaactattggatgccacg cggcatacgaagagtattccccttgtcccatgtgccgtttccagaacttgttaactttctttgc |
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Protein
| Protein ID | habu1_s889_g03222.t1 |
|---|---|
| Definition | - |
>habu1_s889_g03222.t1 MNRPIQVKPADSEGRGEDRKLFVGMLGKQQSEDDVRRLFEPFGQIEECTILRGPDGASKGCAFVKYGSHAEAQAAISTLH GSQTMPGASSSLVVKFADTDKERTLRRMHQMAGQLGIFNPMTIQFGAYGAYTQAIMQQQAALMAAAQGSCLNPMAAIAAA QMQQMAAFNVSGLVAASMTPSSGTSTPPGISAAPVPSIATPIGVNGFSPLPPQTNGQPASETIYTNGIHPYPAQSPTVAD PLQQAYAGMQHYAAAYPAAYAPISQAFPQQTPIIPQQQREGPEGCNLFIYHLPQEFGDAELMQMFLPFGSVISAKVFVDR ATNQSKCFGFVSFDNPTSAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY |
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| Protein ID | habu1_s889_g03222.t2 |
| Definition | - |
>habu1_s889_g03222.t2 MNGLTAPAPGPGGSIAMKDHDAIKLFIGQIPRNLEESDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARDSALKA QSALHEQKTLPGMNRPIQVKPADSEGRGEDRKLFVGMLGKQQSEDDVRRLFEPFGQIEECTILRGPDGASKGCAFVKYGS HAEAQAAISTLHGSQTMPGASSSLVVKFADTDKERTLRRMHQMAGQLGIFNPMTIQFGAYGAYTQAIMQQQAALMAAAQG SCLNPMAAIAAAQMQQMAAFNVSGLVAASMTPSSGTSTPPGISAAPVPSIATPIGVNGFSPLPPQTNGQPASETIYTNGI HPYPAQSPTVADPLQQAYAGMQHYAAAYPAAYAPISQAFPQQTPIIPQQQREGPEGCNLFIYHLPQEFGDAELMQMFLPF GSVISAKVFVDRATNQSKCFGFVSFDNPTSAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY |
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| Protein ID | habu1_s889_g03222.t3 |
| Definition | - |
>habu1_s889_g03222.t3 MNGLTAPAPGPGGSIAMKDHDAIKLFIGQIPRNLEESDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARDSALKA QSALHEQKTLPGMNRPIQVKPADSEGRGGCAFVKYGSHAEAQAAISTLHGSQTMPGASSSLVVKFADTDKERTLRRMHQM AGQLGIFNPMTIQFGAYGAYTQAIMQQQAALMAAAQGSCLNPMAAIAAAQMQQMAAFNVSGLVAASMTPSSGTSTPPGIS AAPVPSIATPIGVNGFSPLPPQTNGQPASETIYTNGIHPYPAQSPTVADPLQQAYAGMQHYAAAYPAAYAPISQAFPQQT PIIPQQQREGPEGCNLFIYHLPQEFGDAELMQMFLPFGSVISAKVFVDRATNQSKCFGFVSFDNPTSAQAAIQAMNGFQI GMKRLKVQLKRPKDANRPY |
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