Gene
| Gene Model ID | habu1_s889_g03231 |
|---|---|
| Locus | habu1_scaffold889 : 846963 ... 853279 : - |
| To GenomeBrowser | habu1_scaffold889:846963..853279 |
| Genes list of scaffold | habu1_scaffold889 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| e3 ubiquitin-protein ligase trim69 | EC:6.3.2.19 GO:0004842 GO:0005737 GO:0008270 GO:0016567 GO:0016607 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s889_g03231.t1 | 1 | 1 | zf-RING_6 | 41 | 103 | 6.1e-06 | 25.9 | 1.1e-08 | 1.1e-05 | 25.0 |
| habu1_s889_g03231.t1 | 1 | 1 | zf-C3HC4_3 | 45 | 89 | 4.4e-07 | 29.4 | 4.5e-10 | 4.4e-07 | 29.4 |
| habu1_s889_g03231.t1 | 1 | 1 | zf-C3HC4 | 47 | 85 | 2.9e-11 | 42.8 | 2.9e-14 | 2.9e-11 | 42.8 |
| habu1_s889_g03231.t1 | 1 | 1 | zf-C3HC4_2 | 47 | 85 | 1.0e-09 | 38.2 | 1.0e-12 | 1.0e-09 | 38.2 |
| habu1_s889_g03231.t1 | 1 | 1 | zf-C3HC4_4 | 47 | 85 | 9.1e-09 | 35.0 | 9.2e-12 | 9.1e-09 | 35.0 |
| habu1_s889_g03231.t1 | 1 | 1 | PRY | 329 | 377 | 6.5e-21 | 73.5 | 1.3e-23 | 1.3e-20 | 72.6 |
| habu1_s889_g03231.t1 | 1 | 1 | SPRY | 380 | 486 | 6.0e-22 | 78.0 | 1.0e-24 | 1.0e-21 | 77.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s889_g03231.t1 | gi|602640042|ref|XP_007426838.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM69, partial [Python bivittatus] | 0.0 |
| habu1_s889_g03231.t1 | gi|637354226|ref|XP_008118912.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM69 [Anolis carolinensis] | 0.0 |
| habu1_s889_g03231.t1 | gi|564233199|ref|XP_006260968.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM69 [Alligator mississippiensis] | 0.0 |
| habu1_s889_g03231.t1 | gi|558184767|ref|XP_006128094.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM69 [Pelodiscus sinensis] | 0.0 |
| habu1_s889_g03231.t1 | gi|507963156|ref|XP_004687903.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM69 [Condylura cristata] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.3 |
| Venom grand-1 | 0.0 |
| Pit, infrared sensing | 0.1 |
| Nose | 0.0 |
| Brain-1 | 0.0 |
| Eye | 0.0 |
| fetal fibroblast | 0.0 |
| venom gland-2 | 0.1 |
| Brain-2 | 0.0 |
| Spleen | 0.4 |
| Lung | 0.2 |
| Liver | 0.1 |
| Kidney | 0.0 |
| Pancreas | 0.2 |
| Small intestine | 0.3 |
| Large intestine | 0.3 |
| Stomach | 0.2 |
| heart | 0.1 |
| ovary | 0.1 |
| cheek muscle | 0.1 |
Transcript
| Transcript ID | habu1_s889_g03231.t1 |
|---|---|
| Definition | - |
>habu1_s889_g03231.t1 caggcaaagaaccaaggattcttctgaacaatgaagtggagactttattctgcaaaataggtgacttccctaaaaatgct ataaatgatagatcaatgggtggaaattggaagccaggctcaatttatcttgaagcaccccaatccaatgcatgtctttc agaggaaaggctagatggtgactactaggtcccagtgtggcattttgaaaaacattttcaaagcaggagctttttcttga tctggaatgacatcaagtggaaattgtacaatgtccacttccagtagcaaaaatccgtccacttcctcgctcatttccct aaacgaacgagcagtgagcccgattcttgccagctcgtcaaacacctcatgggacctgcatgcagatgacttcaccaagg agttgtcctgttccctttgcctcgaactgtttaaagagccggtcattctaccttgcggccataacttctgcaaaccttgt ctggaggccatctggaataaaaagggtgttttctgcccagaatgtcacgtcaacgttcctgaacgcaagttcataatcaa ccaagccttggaaaagatggcggagaagattaagacttttcacataggaggccaacagcagaaatgcatggagcatggcg aaccactgaccctttactggaagcctcaagggaaattagcttgtttcacttgccgagaagctcagatgcctaaggatcaa tgctctcagtttcttctcatccctgatgcagtgcagatatatacggaaaggctacttacattgagacttcagctcaggtc tatcctggtaaaactggatgtgttgaagaatgcccaggaggagaaaatatccagtcataaagagaacaaattgcagctcc agtaccatatctccttggagttcctaaagctgcaccagtttcttcacaccaaggagaaaatgttaattcatcggttaaag gaagagagtgaaatcctcctgcaggaaatggaaggaaacctaaacaaactccaagacagatcacagattgcgaaggacac cttggtctgcattcaggctcggctgtaccagcaaaattctgcgggtttcctaaaaggaataaagccatttgtagaccgga tggaacagaaaactgacaattcgtctatgggagaattagtgactgggacgctcaaccctggagaattcaagggccccatg cattataccatatggaaagaaatgagaaccatccttaatccagacatcacctttgtgaccctggatcctaaaacagccca ccccaacttgatcctctccgaagggttgacctgcgtctggcataatgacatgaagcagattcttccagatattccagaaa gatttgactgcagtgtttcggtcttagcttctgaaggattcactactgggaagcattattgggaagtggaagtgaagaag aagaccaagtggaccttgggagttgttcgggaaagcgttaaccggaaagggaattatcccctgtcacccaaggagggcca ctggttgatcaagctgaggaataagaatgagttaaaggctgtagatgtctaccccaaatgtctaaccttgcttggcaatc tgtgcagagtgggcatctatttggattacgaggagggccaggtatccttttatgaggccatggccatgtctcacctctac accttcacggacactttcaccgagaaggtgtacccctacttttgcccatgtctgaacgactctggagagaacaaggaacc actgagaatcattgcttttgatatgtagaagcatggtgaagatggagatatctcctcagccgatatgtctcagcctggct ttgtgggaaaaaaagactttataggattgtggggtacgctcccagtgccgatagaagggcccacccatttcccttggact tctgctggggcttactcccaactgttttcaacagtagagtagttcctttgcccctttctgtggttcagctgggacaacgg tcatgtcttgaaaaagtagccagatgcctccttgaccacttaaacagcatctccaatgggatcgtccaatttctttatgg gacaatttctgactgtaaggttgagcagaaagatgtatcccaagctattagtgttccattccataacacacatatgatta taataacaataataataaaggtatcttgatcaaatcaaaat |
|
Protein
| Protein ID | habu1_s889_g03231.t1 |
|---|---|
| Definition | - |
>habu1_s889_g03231.t1 MSTSSSKNPSTSSLISLNERAVSPILASSSNTSWDLHADDFTKELSCSLCLELFKEPVILPCGHNFCKPCLEAIWNKKGV FCPECHVNVPERKFIINQALEKMAEKIKTFHIGGQQQKCMEHGEPLTLYWKPQGKLACFTCREAQMPKDQCSQFLLIPDA VQIYTERLLTLRLQLRSILVKLDVLKNAQEEKISSHKENKLQLQYHISLEFLKLHQFLHTKEKMLIHRLKEESEILLQEM EGNLNKLQDRSQIAKDTLVCIQARLYQQNSAGFLKGIKPFVDRMEQKTDNSSMGELVTGTLNPGEFKGPMHYTIWKEMRT ILNPDITFVTLDPKTAHPNLILSEGLTCVWHNDMKQILPDIPERFDCSVSVLASEGFTTGKHYWEVEVKKKTKWTLGVVR ESVNRKGNYPLSPKEGHWLIKLRNKNELKAVDVYPKCLTLLGNLCRVGIYLDYEEGQVSFYEAMAMSHLYTFTDTFTEKV YPYFCPCLNDSGENKEPLRIIAFDM |
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