Gene
| Gene Model ID | habu1_s889_g03232 |
|---|---|
| Locus | habu1_scaffold889 : 853915 ... 859209 : - |
| To GenomeBrowser | habu1_scaffold889:853915..859209 |
| Genes list of scaffold | habu1_scaffold889 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| beta-2- partial | GO:0005737 GO:0009987 GO:0042592 GO:0043227 GO:0044421 GO:0044459 GO:0044707 GO:0048002 GO:0050896 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s889_g03232.t1 | 1 | 1 | C1-set | 38 | 113 | 1.1e-22 | 79.7 | 5.2e-26 | 1.5e-22 | 79.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s889_g03232.t1 | gi|602640032|ref|XP_007426833.1| | PREDICTED: beta-2-microglobulin [Python bivittatus] | 0.0 |
| habu1_s889_g03232.t1 | gi|327285618|ref|XP_003227530.1| | PREDICTED: beta-2-microglobulin [Anolis carolinensis] | 3.0e-39 |
| habu1_s889_g03232.t1 | gi|655862972|ref|XP_008267300.1| | PREDICTED: beta-2-microglobulin [Oryctolagus cuniculus] | 1.0e-34 |
| habu1_s889_g03232.t1 | gi|530572933|ref|XP_005281016.1| | PREDICTED: beta-2-microglobulin [Chrysemys picta bellii] | 7.0e-34 |
| habu1_s889_g03232.t1 | gi|564233201|ref|XP_006260969.1| | PREDICTED: beta-2-microglobulin [Alligator mississippiensis] | 4.0e-33 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 196.8 |
| Venom grand-1 | 221.1 |
| Pit, infrared sensing | 361.5 |
| Nose | 384.1 |
| Brain-1 | 82.5 |
| Eye | 140.7 |
| fetal fibroblast | 248.2 |
| venom gland-2 | 207.3 |
| Brain-2 | 54.6 |
| Spleen | 565.4 |
| Lung | 582.1 |
| Liver | 450.6 |
| Kidney | 143.6 |
| Pancreas | 174.4 |
| Small intestine | 876.9 |
| Large intestine | 881.5 |
| Stomach | 327.1 |
| heart | 240.3 |
| ovary | 83.5 |
| cheek muscle | 294.4 |
Transcript
| Transcript ID | habu1_s889_g03232.t1 |
|---|---|
| Definition | - |
>habu1_s889_g03232.t1 gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatggctttcaaagagcttctcctgtggt gcgttgtgttggtgtgggtctccggccccgcggaagccttggatagacagccagatgtgcaaatgtattcccgctatccc atgtcggttggcaaggagaacgttctgcactgcttcgcggagggtttccaccctccaaaaatcaatgttactcttctgaa gaataatgttgaactacccaacatcaagcagtctgatctctctttcaaggaagactggaccttccaacttctgacttacg cttcggtggttcccaatggaaaagatgaatatacgtgcaaggtggaacaccaggcacttcaggcaccaaagattgtgaaa tggggacaggattactaagccagtagtctccatcaaataagatttgatgaatactgctttgaagcactagttctgctgct gatgtttctgaattgacttcaagtgctgtttctgcttctcactgattgaaaaacaccaatttcaacttttaaaagccagg ccttttcaggaaactatcaaagatagccctcgtgtgtttatataaatcagcatttgagccatcgtgattttataaaaagt tttctacatttagagtcacagtccatatggagtcatcatcataaatatagagtcatagtctcatagtgagggagatagac agtccctaaatatgactgattaatcaatttgaatgtctgaaaaggccatcacttttgctttattgctgttaaatctttta ggaattaagagtatttgcttctgttattgctgagataagaatgggaaaatagaattttctaaaaatgataaagtttcctt ttataaactgctgacactcttacccagcacataagttcattttgttatcctccactaatgtattcataaccctccaataa aagctatcttacagtgttttctt |
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Protein
| Protein ID | habu1_s889_g03232.t1 |
|---|---|
| Definition | - |
>habu1_s889_g03232.t1 MAFKELLLWCVVLVWVSGPAEALDRQPDVQMYSRYPMSVGKENVLHCFAEGFHPPKINVTLLKNNVELPNIKQSDLSFKE DWTFQLLTYASVVPNGKDEYTCKVEHQALQAPKIVKWGQDY |
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