Gene
| Gene Model ID | habu1_s889_g03242 |
|---|---|
| Locus | habu1_scaffold889 : 1124912 ... 1158011 : + |
| To GenomeBrowser | habu1_scaffold889:1124912..1158011 |
| Genes list of scaffold | habu1_scaffold889 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rna-binding protein with multiple splicing 2 | GO:0000166 GO:0003676 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s889_g03242.t2 | 1 | 1 | RRM_1 | 117 | 178 | 1.2e-10 | 40.8 | 5.1e-14 | 2.5e-10 | 39.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s889_g03242.t2 | gi|669274725|ref|XP_008629514.1| | PREDICTED: RNA-binding protein with multiple splicing 2 [Corvus brachyrhynchos] | 0.0 |
| habu1_s889_g03242.t2 | gi|727066642|ref|XP_010410738.1| | PREDICTED: RNA-binding protein with multiple splicing 2 [Corvus cornix cornix] | 0.0 |
| habu1_s889_g03242.t2 | gi|699615206|ref|XP_009875137.1| | PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein with multiple splicing-like, partial [Apaloderma vittatum] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 2.9 |
| Venom grand-1 | 2.5 |
| Pit, infrared sensing | 2.7 |
| Nose | 1.3 |
| Brain-1 | 0.9 |
| Eye | 10.6 |
| fetal fibroblast | 0.3 |
| venom gland-2 | 1.1 |
| Brain-2 | 0.9 |
| Spleen | 9.0 |
| Lung | 54.6 |
| Liver | 2.6 |
| Kidney | 43.5 |
| Pancreas | 4.5 |
| Small intestine | 26.2 |
| Large intestine | 77.4 |
| Stomach | 105.1 |
| heart | 235.3 |
| ovary | 186.9 |
| cheek muscle | 6.2 |
Transcript
| Transcript ID | habu1_s889_g03242.t1 |
|---|---|
| Definition | - |
>habu1_s889_g03242.t1 cgcggcggcgccctcaactccggccaacttggcttggggaatagccgcctctaccctccaccccacccccaccccgccag tcgccttcacacgagtctccgtacacggctgctccacgcaagtcaggacccttcaactaattgtagcaaatgcagaactg gagggtggggggacgcgtgacggcttccgtctcgccaatggccgcattcccacgacctcctgtccccagccaattccgtt tctccagttctctgcctttgccccactccaaacgacccaaaccaccccggggccgcattcgcaggcggccagcccggcta aaacggggacagcaccgtatagaacaagtagatgacaagtatagaacaagcagcaacggatggaaactaaccaaagagag aagcaacctggaactaaggagaaacttcctgacagtgagaacaattaaccagtggaacaacctgcctccagaagcggtga atgctccaacactggaagtttttaagaagagactggacagccatttgtttgaaatggtacggaccctttttgtgagcggc cttccggtggacatcaagccgcgtgagctgtacctccttttccggccatttaagggttatgaaggatcactgatcaaact aacatccaaacagccagtaggctttgttactttcgactgccgttctggtgcagaagctgcaaagaatgctttgaatggga tccgcttcgacccagagaatccccagacgctgcggttagagtttgctaaggccaacaccaagatggcaaaaagcaagctg atggccacaccaaaccccaccaacctccacccagccctaggcgcacacttcattgcacgagatccttatgatctgtctgg agctgccctgatcccagcatctccagaagcatgggctccctacccactgtacaccacggagctaaccccggccattccac atgcagctttcacctatccagctgctgcagctgccgctgctgctcttcacgctcagtgacctgcagccaggatgcctacg caggctagccctgaagctcagagctggccctggaaaggtgggacctcatagtcctgactaacccctgctaaagttggagt agctgtagaacagcttcattcccagaggcctttcaggatgggcccgtctggaacaggctgatgcgctggtaccctcctga cgctagccaacaaggatggaaatcccgtcagttctgttagttttaagctgcttttggcccacgttttcccctcttgtctc tccatggactgatgcatgaaggatgaaggagtctttgagagcctcctctctcggccttttccctggacaccatcaaagtg cccaacttcacttggccgtcttatgaatgaagctatggatttccccctccaaaactgtgaacgtcatctcctccgtctct tccctggtgtcatggctgcccttctcccaactctcccctcccccctccatctgctaagccccaccaccctcctgttgctg agtttctcctcctgctaccttgagtcctttcaggagaaactcaaccttgttgatacacccgcttggtgtgggcgggcgtg tacttgtgtgttcccagctgggatgctggcacacagtgtggcctagctgtgtacggtgcaatatccagacttttcttatc ccgaatcttgtgtatgcagttttgctgaaggaagcaaaaaagacaaatcagttttgcatgttctctggcatgacttttaa aacactttaacttggtgtgggtgtgtgagtgtgcaaagctcgttttttggtctagcatttgtgtaaccatagcagtagat cttggattaactattgatcactaaactttcattttgcttctgtcaagatttggcttttgaaaaaacactttgtcttctct ctcttcctgttctactcttcctcttcctccaggatatctttccatgttcagccttgactagaatttgaaataaaaaagtt tcttctccaaagtacaatgcactgggtttctgctccattttgcccttccccagtttgtcagggtcgttgaggatttttgt ttttgttgttgttattttttttttctgtcaaacttctatatgtagaacagctgtaaaatatttcacctttttcttccaca tccctcggattggaaagaatccagtcttgccaaatcagcaatccttatgggaataccaaacaaagatgtacgagtatttt tgtaccatgtgtaataaggaaatatttatgcatcatgcaaagattttgtgtggtttttgtgcaattaattattaaagagt aaaaaaaaacaaaaaact |
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| Transcript ID | habu1_s889_g03242.t2 |
| Definition | - |
>habu1_s889_g03242.t2 cgcggcggcgccctcaactccggccaacttggcttggggaatagccgcctctaccctccaccccacccccaccccgccag tcgccttcacacgagtctccgtacacggctgctccacgcaagtcaggacccttcaactaattgtagcaaatgcagaactg gagggtggggggacgcgtgacggcttccgtctcgccaatggccgcattcccacgacctcctgtccccagccaattccgtt tctccagttctctgcctttgccccactccaaacgacccaaaccaccccggggccgcattcgcaggcggccagcccggcta aaacggggacagcaccgtatagaacaagtagatgacaagtatagaacaagcagcaacggatggaaactaaccaaagagag aagcaacctggaactaaggagaaacttcctgacagtgagaacaattaaccagtggaacaacctgcctccagaagcggtga atgctccaacactggaagtttttaagaagagactggacagccatttgtttgaaatggtacggaccctttttgtgagcggc cttccggtggacatcaagccgcgtgagctgtacctccttttccggccatttaagggttatgaaggatcactgatcaaact aacatccaaacagccagtaggctttgttactttcgactgccgttctggtgcagaagctgcaaagaatgctttgaatggga tccgcttcgacccagagaatccccagacgctgcggttagagtttgctaaggccaacaccaagatggcaaaaagcaagctg atggccacaccaaaccccaccaacctccacccagccctaggcgcacacttcattgcacgagatccttatgatctgtctgg agctgccctgatcccagcatctccagaagcatgggctccctacccactgtacaccacggagctaaccccggccattccac atgcagctttcacctatccagctgctgcagctgccgctgctgctcttcacgctcagatgcgctggtaccctcctgacgct agccaacaaggatggaaatcccgtcagttctgttagttttaagctgcttttggcccacgttttcccctcttgtctctcca tggactgatgcatgaaggatgaaggagtctttgagagcctcctctctcggccttttccctggacaccatcaaagtgccca acttcacttggccgtcttatgaatgaagctatggatttccccctccaaaactgtgaacgtcatctcctccgtctcttccc tggtgtcatggctgcccttctcccaactctcccctcccccctccatctgctaagccccaccaccctcctgttgctgagtt tctcctcctgctaccttgagtcctttcaggagaaactcaaccttgttgatacacccgcttggtgtgggcgggcgtgtact tgtgtgttcccagctgggatgctggcacacagtgtggcctagctgtgtacggtgcaatatccagacttttcttatcccga atcttgtgtatgcagttttgctgaaggaagcaaaaaagacaaatcagttttgcatgttctctggcatgacttttaaaaca ctttaacttggtgtgggtgtgtgagtgtgcaaagctcgttttttggtctagcatttgtgtaaccatagcagtagatcttg gattaactattgatcactaaactttcattttgcttctgtcaagatttggcttttgaaaaaacactttgtcttctctctct tcctgttctactcttcctcttcctccaggatatctttccatgttcagccttgactagaatttgaaataaaaaagtttctt ctccaaagtacaatgcactgggtttctgctccattttgcccttccccagtttgtcagggtcgttgaggatttttgttttt gttgttgttattttttttttctgtcaaacttctatatgtagaacagctgtaaaatatttcacctttttcttccacatccc tcggattggaaagaatccagtcttgccaaatcagcaatccttatgggaataccaaacaaagatgtacgagtatttttgta ccatgtgtaataaggaaatatttatgcatcatgcaaagattttgtgtggtttttgtgcaattaattattaaagagtaaaa aaaaacaaaaaact |
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Protein
| Protein ID | habu1_s889_g03242.t1 |
|---|---|
| Definition | - |
>habu1_s889_g03242.t1 MAAFPRPPVPSQFRFSSSLPLPHSKRPKPPRGRIRRRPARLKRGQHRIEQVDDKYRTSSNGWKLTKERSNLELRRNFLTV RTINQWNNLPPEAVNAPTLEVFKKRLDSHLFEMVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVTFD CRSGAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKSKLMATPNPTNLHPALGAHFIARDPYDLSGAALIPASPEAWA PYPLYTTELTPAIPHAAFTYPAAAAAAAALHAQ |
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| Protein ID | habu1_s889_g03242.t2 |
| Definition | - |
>habu1_s889_g03242.t2 MAAFPRPPVPSQFRFSSSLPLPHSKRPKPPRGRIRRRPARLKRGQHRIEQVDDKYRTSSNGWKLTKERSNLELRRNFLTV RTINQWNNLPPEAVNAPTLEVFKKRLDSHLFEMVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVTFD CRSGAEAAKNALNGIRFDPENPQTLRLEFAKANTKMAKSKLMATPNPTNLHPALGAHFIARDPYDLSGAALIPASPEAWA PYPLYTTELTPAIPHAAFTYPAAAAAAAALHAQMRWYPPDASQQGWKSRQFC |
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