Gene
| Gene Model ID | habu1_s889_g03245 |
|---|---|
| Locus | habu1_scaffold889 : 1180197 ... 1186931 : - |
| To GenomeBrowser | habu1_scaffold889:1180197..1186931 |
| Genes list of scaffold | habu1_scaffold889 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 40s ribosomal protein s17 | GO:0003735 GO:0005840 GO:0005925 GO:0006364 GO:0006412 GO:0016020 GO:0034101 GO:0042274 GO:0044822 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s889_g03245.t2 | 1 | 1 | Ribosomal_S17e | 1 | 121 | 0.0 | 213.1 | 0.0 | 0.0 | 212.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s889_g03245.t2 | gi|6677801|ref|NP_033118.1| | 40S ribosomal protein S17 [Mus musculus] | 0.0 |
| habu1_s889_g03245.t2 | gi|45383690|ref|NP_989548.1| | 40S ribosomal protein S17 [Gallus gallus] | 0.0 |
| habu1_s889_g03245.t2 | gi|297515469|ref|NP_058848.2| | 40S ribosomal protein S17 [Rattus norvegicus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 1249.2 |
| Venom grand-1 | 3938.0 |
| Pit, infrared sensing | 1955.5 |
| Nose | 1126.7 |
| Brain-1 | 327.5 |
| Eye | 1206.9 |
| fetal fibroblast | 1649.2 |
| venom gland-2 | 3457.3 |
| Brain-2 | 265.8 |
| Spleen | 2425.6 |
| Lung | 2242.6 |
| Liver | 4515.9 |
| Kidney | 3454.6 |
| Pancreas | 3869.9 |
| Small intestine | 3766.4 |
| Large intestine | 2212.5 |
| Stomach | 2936.4 |
| heart | 1839.4 |
| ovary | 417.9 |
| cheek muscle | 2406.0 |
Transcript
| Transcript ID | habu1_s889_g03245.t1 |
|---|---|
| Definition | - |
>habu1_s889_g03245.t1 aatcgatcctgacggacggcctggcctcttccgggggggatttcttcccgccgtagaaatggctacgggaatggaggctg cgggggaacggctaggccgggcgggctctggaagcttccaagggcttgacggtgtccaatcaggggctgtggaagcgaaa gggccgggggtcctccgccccccccagttttgggggaggaaaagaggcgtcgttggggatggggctcacctgcctgcctc ctccccccctcgccttgctgcttgaaaagctgcctggcaggcagagatcccacaggtaaagattccctcccatcaaagtg atgcgtctgcatgggaggatagtcagcgctggacgtgtccgtacgaagacggtgaaaaaagcagcccgggtgatcattga aaaatattacactcgccttggaaatgacttccacacaaacaagcgcgtgtgtgaggagatcgccatcatccccagcaaga aactgcggaacaaaatcgctgggtatgtcactcatctgatgaaacgcattcaaagagggccagttagaggtatctccatc aaactacaagaagaagaaagagaaagaagggataactacgtcccagaggtctctgccctggatcaggagatcattgaagt ggatccagacaccaaggaaatgttgaagttgctggactttggcagcctgtccaatctgcaggtcacacagcccaccgtag ggatgaacttcaaaactccaagaggtgccatctaaagccatttccatgccgtcacttttacaataaatacatagaaacaa caccttgtc |
|
| Transcript ID | habu1_s889_g03245.t2 |
| Definition | - |
>habu1_s889_g03245.t2 tgctctgctagaccgacctttctagttcctttcccaagagcctttgctccctttccgtccgggagctgccaagatgggac gtgtccgtacgaagacggtgaaaaaagcagcccgggtgatcattgaaaaatattacactcgccttggaaatgacttccac acaaacaagcgcgtgtgtgaggagatcgccatcatccccagcaagaaactgcggaacaaaatcgctgggtatgtcactca tctgatgaaacgcattcaaagagggccagttagaggtatctccatcaaactacaagaagaagaaagagaaagaagggata actacgtcccagaggtctctgccctggatcaggagatcattgaagtggatccagacaccaaggaaatgttgaagttgctg gactttggcagcctgtccaatctgcaggtcacacagcccaccgtagggatgaacttcaaaactccaagaggtgccatcta aagccatttccatgccgtcacttttacaataaatacatagaaacaacaccttgtc |
|
Protein
| Protein ID | habu1_s889_g03245.t1 |
|---|---|
| Definition | - |
>habu1_s889_g03245.t1 MRLHGRIVSAGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISI KLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAI |
|
| Protein ID | habu1_s889_g03245.t2 |
| Definition | - |
>habu1_s889_g03245.t2 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERER RDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAI |
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