Gene
| Gene Model ID | habu1_s9000_g19066 |
|---|---|
| Locus | habu1_scaffold9000 : 528906 ... 545130 : - |
| To GenomeBrowser | habu1_scaffold9000:528906..545130 |
| Genes list of scaffold | habu1_scaffold9000 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| type iii iodothyronine partial | EC:1.97.1.10 GO:0004800 GO:0042446 GO:0055114 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s9000_g19066.t1 | 1 | 1 | T4_deiodinase | 1 | 62 | 8.0e-28 | 97.0 | 7.1e-32 | 1.0e-27 | 96.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s9000_g19066.t1 | gi|700347172|ref|XP_009917613.1| | PREDICTED: type III iodothyronine deiodinase, partial [Haliaeetus albicilla] | 5.0e-40 |
| habu1_s9000_g19066.t1 | gi|699575600|ref|XP_009876152.1| | PREDICTED: type III iodothyronine deiodinase, partial [Apaloderma vittatum] | 1.0e-39 |
| habu1_s9000_g19066.t1 | gi|697036004|ref|XP_009580341.1| | PREDICTED: type III iodothyronine deiodinase [Fulmarus glacialis] | 1.0e-39 |
| habu1_s9000_g19066.t1 | gi|701416029|ref|XP_009972333.1| | PREDICTED: LOW QUALITY PROTEIN: type III iodothyronine deiodinase-like, partial [Tyto alba] | 1.0e-39 |
| habu1_s9000_g19066.t1 | gi|701305604|ref|XP_010013528.1| | PREDICTED: type III iodothyronine deiodinase [Nestor notabilis] | 2.0e-39 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 2.7 |
| Venom grand-1 | 7.9 |
| Pit, infrared sensing | 4.0 |
| Nose | 4.2 |
| Brain-1 | 8.4 |
| Eye | 5.3 |
| fetal fibroblast | 30.5 |
| venom gland-2 | 5.9 |
| Brain-2 | 4.4 |
| Spleen | 1.6 |
| Lung | 0.9 |
| Liver | 2.6 |
| Kidney | 2.0 |
| Pancreas | 2.3 |
| Small intestine | 0.3 |
| Large intestine | 0.3 |
| Stomach | 0.6 |
| heart | 0.7 |
| ovary | 2.0 |
| cheek muscle | 3.0 |
Transcript
| Transcript ID | habu1_s9000_g19066.t1 |
|---|---|
| Definition | - |
>habu1_s9000_g19066.t1 cccggcaccagtgcttgcaggaccggctgcgcgcggctcagctgatgaaggaaggcgcgccgggctgcccgctggccgtg gacaccatggacaacgcctcgagcgccgcctacggggcgtacttcgagcgcctgtacattattcaggagcggaaggtgat gtaccagggcggccggggccccgaaggctacaagatctccgaactcaggcgctggctcgaccagtacaagagcagcctcc gggccgggcccagcaccgtggtggtccaggtgaacagagaagaccgtacagtaagaggagttccagaagagggaagggga agagcaccagagtattttcagtacaacataatgttggaaagaaatcatgaaaagggtatcatgatccatcagcaggataa gtctccgcaaattgaacacaacaggatcaagtttggtgcgctgtgaaagccagcaaaagaaatagcaagttcaaaattga cccagatctgactgaaagtgcagaagaaaagattcctggaggaaaatatacccctctacatccctaagggagaagcagtt tagttactagcttgcaggataactttctgaaaactaaacagagtgagaggaattagatgtggcagaagaagacaacaaaa agaaatgtggagtctgaaaacaggccagatcaagccactgactgcagaggagagggggaaaaaatccataatgcatttct atggaggaatatctctgaagagtctcaatgatccaagtcatggttgtctcaaaggtacttttcaaaaaagcaactgaact tttttttttgagggggggagggtaaggtattaaatgttttgcttcttatccaagaa |
|
Protein
| Protein ID | habu1_s9000_g19066.t1 |
|---|---|
| Definition | - |
>habu1_s9000_g19066.t1 MKEGAPGCPLAVDTMDNASSAAYGAYFERLYIIQERKVMYQGGRGPEGYKISELRRWLDQYKSSLRAGPSTVVVQVNRED RTVRGVPEEGRGRAPEYFQYNIMLERNHEKGIMIHQQDKSPQIEHNRIKFGAL |
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