Gene
| Gene Model ID | habu1_s9114_g19164 |
|---|---|
| Locus | habu1_scaffold9114 : 176076 ... 206095 : + |
| To GenomeBrowser | habu1_scaffold9114:176076..206095 |
| Genes list of scaffold | habu1_scaffold9114 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| netrin-4 isoform x1 | GO:0005576 GO:0016322 GO:0043237 GO:0060668 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s9114_g19164.t1 | 1 | 1 | Laminin_N | 31 | 257 | 0.0 | 176.2 | 0.0 | 0.0 | 175.2 |
| habu1_s9114_g19164.t1 | 3 | 1 | Laminin_EGF | 259 | 316 | 2.0e-21 | 75.6 | 6.0e-10 | 2.2e-06 | 27.4 |
| habu1_s9114_g19164.t1 | 3 | 2 | Laminin_EGF | 329 | 380 | 2.0e-21 | 75.6 | 1.4e-13 | 5.3e-10 | 39.0 |
| habu1_s9114_g19164.t1 | 3 | 3 | Laminin_EGF | 392 | 440 | 2.0e-21 | 75.6 | 7.0e-13 | 2.6e-09 | 36.8 |
| habu1_s9114_g19164.t1 | 1 | 1 | NTR | 516 | 618 | 1.3e-19 | 69.7 | 6.4e-23 | 2.4e-19 | 68.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s9114_g19164.t1 | gi|602635648|ref|XP_007424687.1| | PREDICTED: netrin-4 [Python bivittatus] | 0.0 |
| habu1_s9114_g19164.t1 | gi|558140278|ref|XP_006118354.1| | PREDICTED: netrin-4 isoform X3 [Pelodiscus sinensis] | 0.0 |
| habu1_s9114_g19164.t1 | gi|591349522|ref|XP_007069305.1| | PREDICTED: netrin-4 [Chelonia mydas] | 0.0 |
| habu1_s9114_g19164.t1 | gi|558140267|ref|XP_006118352.1| | PREDICTED: netrin-4 isoform X1 [Pelodiscus sinensis] | 0.0 |
| habu1_s9114_g19164.t1 | gi|530639544|ref|XP_005306562.1| | PREDICTED: netrin-4 isoform X1 [Chrysemys picta bellii] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.4 |
| Venom grand-1 | 0.2 |
| Pit, infrared sensing | 0.8 |
| Nose | 0.7 |
| Brain-1 | 3.0 |
| Eye | 0.7 |
| fetal fibroblast | 0.8 |
| venom gland-2 | 0.4 |
| Brain-2 | 2.7 |
| Spleen | 1.3 |
| Lung | 1.9 |
| Liver | 0.2 |
| Kidney | 7.2 |
| Pancreas | 5.5 |
| Small intestine | 1.4 |
| Large intestine | 0.8 |
| Stomach | 0.3 |
| heart | 0.2 |
| ovary | 0.1 |
| cheek muscle | 0.2 |
Transcript
| Transcript ID | habu1_s9114_g19164.t1 |
|---|---|
| Definition | - |
>habu1_s9114_g19164.t1 accggactgcatgcctgccccgcgccccgcgctccaccatggggactcccttctggcacctcgtgttgctgggctgctct gcaggattgagtagtattcttggaactgggtctcgctgtgagaaagcatgcaatcctcaaatgggaaacctagctcatgg acgtaaattgtggacagatactacatgtggctacaacttcacagaattatactgttcctacagtgaaaatacagacctca tatgcaagtggcctaagtgtagcaaatgcaactctatgaatacacatctggctcatccatcttctgccatggttgattca tcttttagattaccacacacatggtggcaatcagcacaaggagtacagacggagaagatccagctcaatttggaaactga attttatttcactcatttgatcatgatattcaagtcaccgagaccagcagccatggtcctagagcgatctcaggattttg gaaaaacttggaagccttataagtatttttccatcaactgctcagcaacctttaggttggatgatgatgtaactaagaaa gaggcactttgcacttcaagatactccagccatttcccctgcactggaggagaggttatatatcgagctctgtcacctcc aaactctgctgatgacccttacagtcctaaaattcaggcacagttgaaaatcacgaaccttcgaatgcaactgctaaagc gacaatcctgcccatgtcacagcaatgatctgaatgcaaacccaccacagctaacttattacgcagtctatgattttatt gtgaagggaagctgtttttgcaatggccatgcagatcgctgtgcacctattaaaggttttaggcctgtcaaagcagcagg agtcttccacgtgctccatgggagatgcatttgtaaacataatactgcaggaattcattgtcagtattgtgcccctcttt acaatgaccagccctggcatgctgcaaatggccaaacaggagctccaaatggatgcaaatcttgcaaatgcaatgggcat tctgacacttgtcactttgatatggacacatggctggcatcagggaatcaaagtgggggcctttgtgacaactgtcaaca taatactgaaggacagcattgtgaacgttgcaagccaggctattatcgagatctcagaaagcctttttctgctccagaca cctgcaaattgtgctcttgcaaccccattggatcagctgtgcttccttttagcaacagcacattctgtgaccctagcaat ggtgattgtccctgcaaacctggtgtggctggtcctcagtgtgatcggtgtatggtaggatactggggatttggatatta tggctgtcaaccatgtgattgtgcaggaagttgtgattcaatcaagggagactgcatcaatagcaatgcagacatagagt ggtaccatgaaattcctggtctctattctgcacgtaacaagagtgaagcagcatggcaatgggaggaagaacaaggatac tctgctcttcgacattcaggcaagtgtgaatgtaaagaccaagttctgcaaaattttaagatcttttgtgccatgaaata tacttatgtggtaaaggcaaagattttgtctgctcatgataaagggtctcatgctgaggtcaatgtgatgatccagaaag tactgaaatctacaaaactgaagattttacatggaaaacagattctttacccagaatcatggactaccagaggttgtacc tgcccaatacttaatcccggtttgaaatatcttgtggcgggatatgaagatattcatacaagcagactgatagtcaatat gaaaagctttgttcaccagtggaaatcagctctggggaaaaagatcttacagatttttaaaaaatgtggctgaaaagggc acttgtttatgcataaaaacatacatgtaaaactttatgaacaacctctgagattaaaactggaatgtgagcagtggtgg gattcaaatatgtgaacaaccggttctctgtgtggatgctgcttccagaagtccattctgggcctgggcaacaaaaaatt agctaccagttctgccaaagtggtatgaactggctaaatcccaccctgaatgtgagggaacagtgccaaatgtagtatta aaaaactttaattcatagctcatt |
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Protein
| Protein ID | habu1_s9114_g19164.t1 |
|---|---|
| Definition | - |
>habu1_s9114_g19164.t1 MGTPFWHLVLLGCSAGLSSILGTGSRCEKACNPQMGNLAHGRKLWTDTTCGYNFTELYCSYSENTDLICKWPKCSKCNSM NTHLAHPSSAMVDSSFRLPHTWWQSAQGVQTEKIQLNLETEFYFTHLIMIFKSPRPAAMVLERSQDFGKTWKPYKYFSIN CSATFRLDDDVTKKEALCTSRYSSHFPCTGGEVIYRALSPPNSADDPYSPKIQAQLKITNLRMQLLKRQSCPCHSNDLNA NPPQLTYYAVYDFIVKGSCFCNGHADRCAPIKGFRPVKAAGVFHVLHGRCICKHNTAGIHCQYCAPLYNDQPWHAANGQT GAPNGCKSCKCNGHSDTCHFDMDTWLASGNQSGGLCDNCQHNTEGQHCERCKPGYYRDLRKPFSAPDTCKLCSCNPIGSA VLPFSNSTFCDPSNGDCPCKPGVAGPQCDRCMVGYWGFGYYGCQPCDCAGSCDSIKGDCINSNADIEWYHEIPGLYSARN KSEAAWQWEEEQGYSALRHSGKCECKDQVLQNFKIFCAMKYTYVVKAKILSAHDKGSHAEVNVMIQKVLKSTKLKILHGK QILYPESWTTRGCTCPILNPGLKYLVAGYEDIHTSRLIVNMKSFVHQWKSALGKKILQIFKKCG |
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