Gene
| Gene Model ID | habu1_s9825_g19699 |
|---|---|
| Locus | habu1_scaffold9825 : 131946 ... 139585 : - |
| To GenomeBrowser | habu1_scaffold9825:131946..139585 |
| Genes list of scaffold | habu1_scaffold9825 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ras-related protein rab-27a | GO:0001750 GO:0003924 GO:0005525 GO:0005764 GO:0005794 GO:0006605 GO:0007264 GO:0007596 GO:0010628 GO:0016459 GO:0019003 GO:0019882 GO:0030141 GO:0030318 GO:0030425 GO:0031489 GO:0032402 GO:0032585 GO:0036257 GO:0042470 GO:0043316 GO:0043320 GO:0070062 GO:0070382 GO:0071985 GO:1903307 GO:1903435 GO:1990182 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s9825_g19699.t1 | 1 | 1 | Arf | 10 | 144 | 5.9e-10 | 38.6 | 2.7e-13 | 7.9e-10 | 38.2 |
| habu1_s9825_g19699.t1 | 1 | 1 | Ras | 11 | 178 | 0.0 | 177.4 | 0.0 | 0.0 | 177.2 |
| habu1_s9825_g19699.t1 | 1 | 1 | Miro | 11 | 136 | 6.2e-18 | 65.4 | 2.7e-21 | 8.0e-18 | 65.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s9825_g19699.t1 | gi|126277201|ref|XP_001368456.1| | PREDICTED: ras-related protein Rab-27A isoform X1 [Monodelphis domestica] | 0.0 |
| habu1_s9825_g19699.t1 | gi|505773712|ref|XP_004601721.1| | PREDICTED: ras-related protein Rab-27A [Sorex araneus] | 0.0 |
| habu1_s9825_g19699.t1 | gi|533122679|ref|XP_005376668.1| | PREDICTED: ras-related protein Rab-27A isoform X1 [Chinchilla lanigera] | 0.0 |
| habu1_s9825_g19699.t1 | gi|527255353|ref|XP_005145959.1| | PREDICTED: ras-related protein Rab-27A [Melopsittacus undulatus] | 0.0 |
| habu1_s9825_g19699.t1 | gi|348572112|ref|XP_003471838.1| | PREDICTED: ras-related protein Rab-27A [Cavia porcellus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 0.6 |
| Venom grand-1 | 1.0 |
| Pit, infrared sensing | 0.5 |
| Nose | 1.1 |
| Brain-1 | 0.2 |
| Eye | 0.5 |
| fetal fibroblast | 0.2 |
| venom gland-2 | 0.6 |
| Brain-2 | 0.3 |
| Spleen | 0.8 |
| Lung | 2.5 |
| Liver | 0.6 |
| Kidney | 0.5 |
| Pancreas | 2.2 |
| Small intestine | 1.2 |
| Large intestine | 6.7 |
| Stomach | 9.8 |
| heart | 5.1 |
| ovary | 0.2 |
| cheek muscle | 0.7 |
Transcript
| Transcript ID | habu1_s9825_g19699.t1 |
|---|---|
| Definition | - |
>habu1_s9825_g19699.t1 cccccactctctgctggagaaccctttaacagatgttgctgcaaggggctgagccgtacccatttccctggaagtaaaaa acatggtcctgagtggtatcacttgatcagccagccacatgactgtcagctgaggatagctggaggataatagccagctg gcttgcctattgccagaacccttgagtatccagtctatttctagagcctccagccacttctactcccaaccccagacctg ctaggacctctttccaagcagctccagatcccttctatgctgtagagtggtggcatgagagactctgggattgatgcatt ttacccttgtagttgtcaggctacggaagcgcttctgaaggtctgccagtgttctcttggtcttcagccaaacagtctcc tccctggctcctctgtccagttcccctcctcctcctgctccagaggaaatcctgcagggccggcttcttctagttctggg aagtgggagaggcatttgggccggctttgtggcctgtgggaaggtgggtggagagggtttgcgactgagcgagggccacc atcgtatgaaggctttgtgtggcaaaggatgagaggcagaacagatctagtgttttagtattccatcttgatgaaatttg agctactgaagccttcagagtaaatgcccacatttgcatatgcgtgcacatgcccccccagcatatgggagaagtcttgc taaagtctccaggtgacacgtaagctgctgcagctgctgttccttgctgggcgagaagcaggtggggctcagaaggccag cccaaggcacctctccctctggcagcagcaacagcagcacaaaggctgttactgaaggtcactcgctatgtctgacgggg actacgattacctcatcaagttcctagcccttggtgattctggggttggaaagaccagtttcctttaccagtacacagat gggaaattcaattccaaattcatcacaaccgtaggcattgattttcaggaaaagaggctggtgtaccgatccaacagacc agatggggtcagtggccgagggcagagaatacatcttcagttgtgggacacagcagggcaggaaaggtttcgtagcttga ccaccgccttcttcagagatgccatgggctttctccttctctttgatctaaccagcgagcaaagtttcctcaatgtccgg aactggatgagccagctgcagacccacgcctactgcgagagccccgacatggtgctgtgcgggaacaagagcgacctgga ggagcagcgcgtggtgaaggaaggcgacgccaggcagctggcaggcaaatacggggcgccctacttcgagaccagcgccg ccaacggcgccaacgtgggcccggccgtggagtcgctgctcgggctgctcatgaagcgcatggagcggtgcgtggacgga acccacgcttgggcccccaacggcccccccgagacgcccccgcggcccgccagcggctgcagctgctgaagactccgccg cggcccacccgcgcccggcagatgcgcaataaaccagtccgtggtcagattccgc |
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Protein
| Protein ID | habu1_s9825_g19699.t1 |
|---|---|
| Definition | - |
>habu1_s9825_g19699.t1 MSDGDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNSKFITTVGIDFQEKRLVYRSNRPDGVSGRGQRIHLQLWDTAGQER FRSLTTAFFRDAMGFLLLFDLTSEQSFLNVRNWMSQLQTHAYCESPDMVLCGNKSDLEEQRVVKEGDARQLAGKYGAPYF ETSAANGANVGPAVESLLGLLMKRMERCVDGTHAWAPNGPPETPPRPASGCSC |
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