Protobothrops flavoviridis ver. 1.0

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDhabu1_s997_g03490
Locus habu1_scaffold997 : 296799 ... 310565 : -
To GenomeBrowser habu1_scaffold997:296799..310565
Genes list of scaffold habu1_scaffold997

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
habu1_s997_g03490.t2 1 1 zf-UBP 38 99 2.0e-15 56.6 8.1e-19 2.0e-15 56.6
habu1_s997_g03490.t2 1 1 UCH 153 638 0.0 171.3 0.0 0.0 165.8
habu1_s997_g03490.t2 2 1 UCH_1 154 565 2.4e-15 56.7 7.1e-10 1.8e-06 27.6
habu1_s997_g03490.t2 2 2 UCH_1 575 619 2.4e-15 56.7 2.6e-09 6.4e-06 25.8
habu1_s997_g03490.t2 2 1 DUSP 608 733 3.6e-24 85.0 6.6e-10 1.6e-06 28.3
habu1_s997_g03490.t2 2 2 DUSP 773 844 3.6e-24 85.0 9.1e-18 2.2e-14 53.6

Expression profile
Libraries FPKM
>Adult
Venom fang forming tissue 9.7
Venom grand-1 10.4
Pit, infrared sensing 9.0
Nose 7.2
Brain-1 10.7
Eye 22.5
fetal fibroblast 7.5
venom gland-2 11.0
Brain-2 10.3
Spleen 10.4
Lung 14.6
Liver 17.8
Kidney 14.5
Pancreas 14.6
Small intestine 9.8
Large intestine 10.2
Stomach 8.4
heart 10.7
ovary 14.9
cheek muscle 13.1

Transcript
Transcript IDhabu1_s997_g03490.t1
Definition-
>habu1_s997_g03490.t1
ggccgctgtggcaagaaaggtcgtaaaaaggggcgaaactcatttaacaactggctgtcttgcttaccaacagaaatttt
gggcttgattgtggtcgataggggtgaaaaacagaggggaaagaatgaaactggcagaaaaaaacagctgtgaacagctc
cagcttttgtggggaaaatgatgagggagcccaggcacaagatgggagacccaagagacctctgtcctcacctggattgc
ataggtgaggtcaccaaggacgacatgcttttcaagtccaagggaacatgccagtcttgcggtgcgggaggaccaaatct
atgggcctgccttcaggttggttgccattacgtcggctgtggggagtcctttgcggatcacagcactttgcacgcccagg
ccaaaaagcacaatttgacggtgaacttgaccacgtttcgggtgtggtgctacgcgtgcgagaaggaggtgttcttggac
caaactctggcttcccatcctgccaatctgccttccaaatttatggaacaggatgctctcccgcctgtccacccgctcaa
agctgtcccaatcgccgtcgctgacgaaggagaatcggaatcagaagacgacgacctgaaaccaagaggccttacaggga
tgaaaaacctggggaattcgtgttacatgaacgctgctctccaggctctctccaactgccccccactcacccagttcttc
cttgaatgcgggggcctcgtgagaaccgacaagaagccggcactctgcaaaagttaccagaagctgatctccgaagtctg
gcacaaaaaacgcccgagctatgttgtccccagcagcctctcccacagcatcaagctgatcaaccccatgttccggggct
acgcacaacaggacacccaggaatttctccgctgcctgatggaccaacttcacgaagagctgaaggagccggtggtggct
gagctgcgcgactcggacgcaagcgacacggacgagaagagggagggggaccgcagcccctcggaggacgagttcctctc
ctgcgactcgagcagcgaccgcggagaaggggacgggcagggcaaaatgggccccgcctcggccgaagcggagctgctga
tccaggacgaggcgggccggagcatctccgagaaggaacggatgaaggatcggaagttctcctgccaccaacggcggagc
aactcggagcaagtggacgaagatgccgacgtcgacacctcggtgatggcggtggagggcggggcttctccggaagggct
cctgccgccccctcctcgacccgccagccctgcgaggaccccagagccagataatgacgcctaccctcgttgctcatcgc
ggccctgcagccccatccaccatgatatgtacgccaaactctcgaatcctccgcattccagccctgtgaggctgggagcc
tcctacgtgctgaagaaagctcagctgttgacgtctggaaaaaggaagaaagagttgcgctaccgtagcgtcatctccga
catctttgacggctccattctcagcctcgtccagtgcctcacctgtgaccgagtttccaccaccgtagagaccttccagg
atctgtcgctgccgattcccgggaaggaagacttggctaaactacattcagccatttatcaaaatgtgccagtcaagaca
ggagcctgcggtgacaactatgccgcctcgcagggctggatcgccttcatcatggactacattcgcaggtttgtggtgtc
ctgtatccccagctggttttggggccccgtcgtcaccctggaagactgcctggctgcctttttcgctgcagacgagttga
aaggtgacaacatgtacagctgtgaaagatgcctggacctgcggcccttcctggccaaggagagcctctccaaagtcaca
aattacgacctcctctcggtgatttgccaccacggcacagccggcagtaagtcacccgccttcctgtccccgattcctct
gaacgggttccggaagtgggccgcgggctccggaccccatcaaatgcttggcctttcgctcccaggtggacattacattg
cttactgccagaacatgatcaacggccagtggtacgaattcgacgaccagtacgtgaccgaagtgcacgaaacgatcgtg
cagaacgccgaggcttacgtcttgttctatagaaaaagcagcgaggaggctgtccgggagcgccagaaagtcgtctcttt
ggccaccatgaaggagcccggcctgctgcagttttacatctcccgggaatggctgaacaagttcaacaccttcacggagc
ccggacccatcagcaaccacatcttcctctgcccccacggaggaatcccaccgaataaataccattatatcgatgatctg
gtggtaattcttccccaaaatgtttgggaatacctgtataacaggtttgggggtggcccagccgtcaatcacctctacgt
ctgctcggtgtgccaggtagagatcgaagctctggctaagcggagaaagatggagatcgacaccttcatcaagctgaaca
aagccttccaggccgaggagtgtccgagtgtcatcttttgcatcagcatgcagtggttccgcgaatgggaggccttcgtc
aaagggaaggacaacgagccccctggcccgatcgacaacaccaaaattgccgtggccaaaggaagcggccacatgcaagt
caaacagggagccgattacgggcagatctcggaggagacctggatctacttgagcacgctctacggtggaggccccgaga
tcgccatccggcaaaatgtggcccaggtgcaggaggtggaaagcctccacggggagcagaagatcgaagctgagaccaga
gcagcgtaagacgatggggacgttcaggtcggctcccccttcagactccttctgcgttttggaactcgacacacgtccca
ccccctgccctgtccccagccagccacttgccccccccgtcttaatttgacgctcggtcg
Transcript IDhabu1_s997_g03490.t2
Definition-
>habu1_s997_g03490.t2
ggccgctgtggcaagaaaggtcgtaaaaaggggcgaaactcatttaacaactggctgtcttgcttaccaacagaaatttt
gggcttgattgtggtcgataggggtgaaaaacagaggggaaagaatgaaactggcagaaaaaaacagctgtgaacagctc
cagcttttgtggggaaaatgatgagggagcccaggcacaagatgggagacccaagagacctctgtcctcacctggattgc
ataggtgaggtcaccaaggacgacatgcttttcaagtccaagggaacatgccagtcttgcggtgcgggaggaccaaatct
atgggcctgccttcaggttggttgccattacgtcggctgtggggagtcctttgcggatcacagcactttgcacgcccagg
ccaaaaagcacaatttgacggtgaacttgaccacgtttcgggtgtggtgctacgcgtgcgagaaggaggtgttcttggac
caaactctggcttcccatcctgccaatctgccttccaaatttatggaacaggatgctctcccgcctgtccacccgctcaa
agctgtcccaatcgccgtcgctgacgaaggagaatcggaatcagaagacgacgacctgaaaccaagaggccttacaggga
tgaaaaacctggggaattcgtgttacatgaacgctgctctccaggctctctccaactgccccccactcacccagttcttc
cttgaatgcgggggcctcgtgagaaccgacaagaagccggcactctgcaaaagttaccagaagctgatctccgaagtctg
gcacaaaaaacgcccgagctatgttgtccccagcagcctctcccacagcatcaagctgatcaaccccatgttccggggct
acgcacaacaggacacccaggaatttctccgctgcctgatggaccaacttcacgaagagctgaaggagccggtggtggct
gagctgcgcgactcggacgcaagcgacacggacgagaagagggagggggaccgcagcccctcggaggacgagttcctctc
ctgcgactcgagcagcgaccgcggagaaggggacgggcagggcaaaatgggccccgcctcggccgaagcggagctgctga
tccaggacgaggcgggccggagcatctccgagaaggaacggatgaaggatcggaagttctcctgccaccaacggcggagc
aactcggagcaagtggacgaagatgccgacgtcgacacctcggtgatggcggtggagggcggggcttctccggaagggct
cctgccgccccctcctcgacccgccagccctgcgaggaccccagagccagataatgacgcctaccctcgttgctcatcgc
ggccctgcagccccatccaccatgatatgtacgccaaactctcgaatcctccgcattccagccctgtgaggctgggagcc
tcctacgtgctgaagaaagctcagctgttgacgtctggaaaaaggaagaaagagttgcgctaccgtagcgtcatctccga
catctttgacggctccattctcagcctcgtccagtgcctcacctgtgaccgagtttccaccaccgtagagaccttccagg
atctgtcgctgccgattcccgggaaggaagacttggctaaactacattcagccatttatcaaaatgtgccagtcaagaca
ggagcctgcggtgacaactatgccgcctcgcagggctggatcgccttcatcatggactacattcgcaggtttgtggtgtc
ctgtatccccagctggttttggggccccgtcgtcaccctggaagactgcctggctgcctttttcgctgcagacgagttga
aaggtgacaacatgtacagctgtgaaagatgcctggacctgcggcccttcctggccaaggagagcctctccaaagtcaca
aattacgacctcctctcggtgatttgccaccacggcacagccggcagtggacattacattgcttactgccagaacatgat
caacggccagtggtacgaattcgacgaccagtacgtgaccgaagtgcacgaaacgatcgtgcagaacgccgaggcttacg
tcttgttctatagaaaaagcagcgaggaggctgtccgggagcgccagaaagtcgtctctttggccaccatgaaggagccc
ggcctgctgcagttttacatctcccgggaatggctgaacaagttcaacaccttcacggagcccggacccatcagcaacca
catcttcctctgcccccacggaggaatcccaccgaataaataccattatatcgatgatctggtggtaattcttccccaaa
atgtttgggaatacctgtataacaggtttgggggtggcccagccgtcaatcacctctacgtctgctcggtgtgccaggta
gagatcgaagctctggctaagcggagaaagatggagatcgacaccttcatcaagctgaacaaagccttccaggccgagga
gtgtccgagtgtcatcttttgcatcagcatgcagtggttccgcgaatgggaggccttcgtcaaagggaaggacaacgagc
cccctggcccgatcgacaacaccaaaattgccgtggccaaaggaagcggccacatgcaagtcaaacagggagccgattac
gggcagatctcggaggagacctggatctacttgagcacgctctacggtggaggccccgagatcgccatccggcaaaatgt
ggcccaggtgcaggaggtggaaagcctccacggggagcagaagatcgaagctgagaccagagcagcgtaagacgatgggg
acgttcaggtcggctcccccttcagactccttctgcgttttggaactcgacacacgtcccaccccctgccctgtccccag
ccagccacttgccccccccgtcttaatttgacgctcggtcgcttctcccgccgggggccgagagcatctctcctgcctgt
ttttgtcccaagatcgtcccgttccaggcaaggaagagctcctgcctgcctttggttccctgctttctcatcccatcgtc
tgcagaagccgggaagagttcttgcggagaagttggggccgcccttggaaggagccggcgtcataaccattcccgtttgc
cacctggctggccttttgtgactcgagctgttcctggagaaagtcccaagaaggggtgcaccattgtcttggttctcctt
ttggttcctctcctgaatttggggccagagattttgaagtcgcctggaaagaacctcgttggaaaggaatacgtggagcg
acaaggttcccccctcccttttgtggcatacaaaatatatttcttctgcccttctcccgta

Protein
Protein IDhabu1_s997_g03490.t1
Definition-
>habu1_s997_g03490.t1
MMREPRHKMGDPRDLCPHLDCIGEVTKDDMLFKSKGTCQSCGAGGPNLWACLQVGCHYVGCGESFADHSTLHAQAKKHNL
TVNLTTFRVWCYACEKEVFLDQTLASHPANLPSKFMEQDALPPVHPLKAVPIAVADEGESESEDDDLKPRGLTGMKNLGN
SCYMNAALQALSNCPPLTQFFLECGGLVRTDKKPALCKSYQKLISEVWHKKRPSYVVPSSLSHSIKLINPMFRGYAQQDT
QEFLRCLMDQLHEELKEPVVAELRDSDASDTDEKREGDRSPSEDEFLSCDSSSDRGEGDGQGKMGPASAEAELLIQDEAG
RSISEKERMKDRKFSCHQRRSNSEQVDEDADVDTSVMAVEGGASPEGLLPPPPRPASPARTPEPDNDAYPRCSSRPCSPI
HHDMYAKLSNPPHSSPVRLGASYVLKKAQLLTSGKRKKELRYRSVISDIFDGSILSLVQCLTCDRVSTTVETFQDLSLPI
PGKEDLAKLHSAIYQNVPVKTGACGDNYAASQGWIAFIMDYIRRFVVSCIPSWFWGPVVTLEDCLAAFFAADELKGDNMY
SCERCLDLRPFLAKESLSKVTNYDLLSVICHHGTAGSKSPAFLSPIPLNGFRKWAAGSGPHQMLGLSLPGGHYIAYCQNM
INGQWYEFDDQYVTEVHETIVQNAEAYVLFYRKSSEEAVRERQKVVSLATMKEPGLLQFYISREWLNKFNTFTEPGPISN
HIFLCPHGGIPPNKYHYIDDLVVILPQNVWEYLYNRFGGGPAVNHLYVCSVCQVEIEALAKRRKMEIDTFIKLNKAFQAE
ECPSVIFCISMQWFREWEAFVKGKDNEPPGPIDNTKIAVAKGSGHMQVKQGADYGQISEETWIYLSTLYGGGPEIAIRQN
VAQVQEVESLHGEQKIEAETRAA
Protein IDhabu1_s997_g03490.t2
Definition-
>habu1_s997_g03490.t2
MMREPRHKMGDPRDLCPHLDCIGEVTKDDMLFKSKGTCQSCGAGGPNLWACLQVGCHYVGCGESFADHSTLHAQAKKHNL
TVNLTTFRVWCYACEKEVFLDQTLASHPANLPSKFMEQDALPPVHPLKAVPIAVADEGESESEDDDLKPRGLTGMKNLGN
SCYMNAALQALSNCPPLTQFFLECGGLVRTDKKPALCKSYQKLISEVWHKKRPSYVVPSSLSHSIKLINPMFRGYAQQDT
QEFLRCLMDQLHEELKEPVVAELRDSDASDTDEKREGDRSPSEDEFLSCDSSSDRGEGDGQGKMGPASAEAELLIQDEAG
RSISEKERMKDRKFSCHQRRSNSEQVDEDADVDTSVMAVEGGASPEGLLPPPPRPASPARTPEPDNDAYPRCSSRPCSPI
HHDMYAKLSNPPHSSPVRLGASYVLKKAQLLTSGKRKKELRYRSVISDIFDGSILSLVQCLTCDRVSTTVETFQDLSLPI
PGKEDLAKLHSAIYQNVPVKTGACGDNYAASQGWIAFIMDYIRRFVVSCIPSWFWGPVVTLEDCLAAFFAADELKGDNMY
SCERCLDLRPFLAKESLSKVTNYDLLSVICHHGTAGSGHYIAYCQNMINGQWYEFDDQYVTEVHETIVQNAEAYVLFYRK
SSEEAVRERQKVVSLATMKEPGLLQFYISREWLNKFNTFTEPGPISNHIFLCPHGGIPPNKYHYIDDLVVILPQNVWEYL
YNRFGGGPAVNHLYVCSVCQVEIEALAKRRKMEIDTFIKLNKAFQAEECPSVIFCISMQWFREWEAFVKGKDNEPPGPID
NTKIAVAKGSGHMQVKQGADYGQISEETWIYLSTLYGGGPEIAIRQNVAQVQEVESLHGEQKIEAETRAA

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