Gene
| Gene Model ID | habu1_s997_g03492 |
|---|---|
| Locus | habu1_scaffold997 : 316446 ... 320879 : + |
| To GenomeBrowser | habu1_scaffold997:316446..320879 |
| Genes list of scaffold | habu1_scaffold997 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| torsin a | EC:3.6.1.3 GO:0000338 GO:0005524 GO:0005788 GO:0005871 GO:0007155 GO:0008021 GO:0016887 GO:0019894 GO:0031175 GO:0031965 GO:0034504 GO:0042406 GO:0044319 GO:0045104 GO:0051085 GO:0051260 GO:0051584 GO:0051787 GO:0070062 GO:0071712 GO:0071763 GO:0072321 GO:1900244 GO:2000008 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s997_g03492.t1 | 1 | 1 | Torsin | 28 | 154 | 0.0 | 177.5 | 0.0 | 0.0 | 176.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s997_g03492.t1 | gi|602649833|ref|XP_007431317.1| | PREDICTED: torsin-1A [Python bivittatus] | 0.0 |
| habu1_s997_g03492.t1 | gi|558186146|ref|XP_006128401.1| | PREDICTED: torsin-1A-like [Pelodiscus sinensis] | 0.0 |
| habu1_s997_g03492.t1 | gi|641764624|ref|XP_008167416.1| | PREDICTED: torsin-1A isoform X1 [Chrysemys picta bellii] | 0.0 |
| habu1_s997_g03492.t1 | gi|543367952|ref|XP_005527326.1| | PREDICTED: torsin-1A [Pseudopodoces humilis] | 0.0 |
| habu1_s997_g03492.t1 | gi|683921547|ref|XP_009091677.1| | PREDICTED: LOW QUALITY PROTEIN: torsin-1A-like [Serinus canaria] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 18.5 |
| Venom grand-1 | 28.5 |
| Pit, infrared sensing | 18.8 |
| Nose | 22.2 |
| Brain-1 | 10.4 |
| Eye | 15.8 |
| fetal fibroblast | 31.0 |
| venom gland-2 | 54.6 |
| Brain-2 | 11.2 |
| Spleen | 15.5 |
| Lung | 19.4 |
| Liver | 21.7 |
| Kidney | 22.4 |
| Pancreas | 20.3 |
| Small intestine | 33.3 |
| Large intestine | 24.2 |
| Stomach | 35.9 |
| heart | 18.9 |
| ovary | 31.2 |
| cheek muscle | 19.9 |
Transcript
| Transcript ID | habu1_s997_g03492.t1 |
|---|---|
| Definition | - |
>habu1_s997_g03492.t1 gctggggtgaattaggcggcggcccaagggcggctgccggcgatgaagcagctccgagcgcccggggcgctatggggcct ggccttgatgctgtggcaggtgggcccgggggcgcgggcgatggacccggtcaccgtgggcatcgccttggccggcaccg cctcggccctcaccggcctcatctccctcccgaggctgtattgctactttgctgaatgctgcgtggaaaggccggtggcg caggtcgggaaagatcttaaggacaatttggagaaaaaagtcttcggacaacatcttgtgtcagaggtgatagtgaaagc cgtgacggggtttttgacaaacccaaatccgaagaaacccctggccctctctttgcatggatggacggggacgggcaaga atttcgtcagtaagattgtggcagaaagcctttacgatgaaggcctcaagagcaaatacgtgcaccagtttgtgtctact ttgcacttcccacatcagcagaacatcagtcagtacaaggaccaattgcaaacgtggattcgtggcaacgtgagttcctg tgcaaggtcaatcttcatatttgacgagatggacaaaatgcacgctggactcatagactccattaagcctttcctggaat attatgaagaaatagatggcatatcgtatcgaaaagcgattttcatcttcctcagcaatgccggagctgaaaaaataacc gaagtggcaatcgaccattggaagaatggaaagaagagggaagagctgcctctccatattttgcaacagacattgtcgaa ttctgtgtttaataacaaaaatagtggattttggcacagcaacctgatcgaccgaaatgtcatcgattactttattccct tcctgcctctcgaaatcagccatgtgaaaatgtgcatcagggctgaattggaattgcggggccaccccgtcaacgaagcc gtggtctcacgggtggccgatgagatgacctatttccccaaagaggagcggatctattccgataaagggtgcaagacagt ttacacaaaattagatttctattacgacgtctaaaattgttttctgcttgcaacttcagagaaggggaaaaaaacgaacc tattcagaggactcaaaggagaaaccaaacactttctttctcccccccccccgagattttaacctatgtaaataggatga ctaattgagattggggaagagctgggatctctaaaattgtggccctgtgttaagaaaacagtttcgaggtccatccgttg caaaattgttttaatcatgactgcattttggtccatgccacaagctctttagggaccacgtccatttgcctggaaatgaa aacggttctaattagataacagttgattacgaaaagttgtggggttgttttttttgggggggggggaaacatttgtgact cctaagaaatgaaggaatgtttttgcatctgtgcatttttttaaaaaaataattttgtacaaattagcagcttgaatctt tccagcaatcttgagctaatgtatgcttcattagaaatgattctttgggtatccttcgagctgcttttaaagagccttta ttgtgtatccagaccagtgttggtgctaaaaaaataataatcagaaatgtgatctatggctgccaaaattgtcaagcaac aaaatatttgactatatttcagggagatgttttttttttgtttttttttttgtaattttggaataaaacacaactggcca tcttaactc |
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Protein
| Protein ID | habu1_s997_g03492.t1 |
|---|---|
| Definition | - |
>habu1_s997_g03492.t1 MDPVTVGIALAGTASALTGLISLPRLYCYFAECCVERPVAQVGKDLKDNLEKKVFGQHLVSEVIVKAVTGFLTNPNPKKP LALSLHGWTGTGKNFVSKIVAESLYDEGLKSKYVHQFVSTLHFPHQQNISQYKDQLQTWIRGNVSSCARSIFIFDEMDKM HAGLIDSIKPFLEYYEEIDGISYRKAIFIFLSNAGAEKITEVAIDHWKNGKKREELPLHILQQTLSNSVFNNKNSGFWHS NLIDRNVIDYFIPFLPLEISHVKMCIRAELELRGHPVNEAVVSRVADEMTYFPKEERIYSDKGCKTVYTKLDFYYDV |
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