Gene
| Gene Model ID | habu1_s997_g03493 |
|---|---|
| Locus | habu1_scaffold997 : 340979 ... 344265 : - |
| To GenomeBrowser | habu1_scaffold997:340979..344265 |
| Genes list of scaffold | habu1_scaffold997 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| torsin- partial | GO:0005524 GO:0051085 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s997_g03493.t1 | 1 | 1 | Torsin | 47 | 173 | 0.0 | 165.1 | 0.0 | 0.0 | 164.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s997_g03493.t1 | gi|602649847|ref|XP_007431324.1| | PREDICTED: torsin-1B, partial [Python bivittatus] | 0.0 |
| habu1_s997_g03493.t1 | gi|557283148|ref|XP_006024459.1| | PREDICTED: torsin-1B-like [Alligator sinensis] | 0.0 |
| habu1_s997_g03493.t1 | gi|530599848|ref|XP_005293416.1| | PREDICTED: torsin-1B [Chrysemys picta bellii] | 0.0 |
| habu1_s997_g03493.t1 | gi|594039134|ref|XP_006044161.1| | PREDICTED: torsin-1B [Bubalus bubalis] | 0.0 |
| habu1_s997_g03493.t1 | gi|555994215|ref|XP_005908862.1| | PREDICTED: torsin-1B [Bos mutus] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 12.3 |
| Venom grand-1 | 11.9 |
| Pit, infrared sensing | 8.5 |
| Nose | 10.9 |
| Brain-1 | 2.4 |
| Eye | 6.7 |
| fetal fibroblast | 15.9 |
| venom gland-2 | 23.8 |
| Brain-2 | 2.3 |
| Spleen | 3.5 |
| Lung | 7.7 |
| Liver | 10.5 |
| Kidney | 4.0 |
| Pancreas | 1.9 |
| Small intestine | 1.8 |
| Large intestine | 4.0 |
| Stomach | 4.9 |
| heart | 4.9 |
| ovary | 30.3 |
| cheek muscle | 9.7 |
Transcript
| Transcript ID | habu1_s997_g03493.t1 |
|---|---|
| Definition | - |
>habu1_s997_g03493.t1 gggagttgtagtcgcgggcgccggagaggcagtcatgctgcggccggcggggctgctggcgttgctgctgctgggcgcgc tgcggtcggcggcgctggagccggtcagcgtcagcctggccatcggggcggcctccatgctgaccggctacctctcctcg ccccgcttctactgcgccttcgtggagtgctgccctcccgacgaccaccgacccgaccccgcagccctgcagcaggccct ggacgagaggctcttcggccagcacctggcccaaggggtcatcctgaaggcgctgaccggcttcatcaacaaccccaacc cgaagaagccgctggtcctctcgctgcacggctgggccgggacgggcaaaaactttgtcagccagatcatcgccgagaac ctctacccagccgggctcaagagcaaatttgtgcacctctttctttccacgctgcatttcccgcacgagcacctggtccc cctctacaaggaccagctgcagaaatggatccggggcaacgtgagcagctgcgcaaagtccctcttcatctttgacgaaa tggacaagttgcacccggggttgattgacgccatcaaacccttcctggattactacgagcagattgacggcgtgtcgtat cggagagccatcttcattttcctcagtaacgcgggcggtgacttgatcacgaaagtcgcgctagatttttggaggagcgg ccaagagagggaaaagatcgggctgaaagatctggaagtggtcttgtccctgggggttttcaacaacaggaacagcggcc tgtggcacagcagcctgatcgaccgaaacctcatcgattactttgttccgttccttcccctggagtacaagcacgtcaag atgtgcatccgggcagagatgaaatcccgcagcaacccgatcaacgaagagatcgtcaaccaggtggccaacgagatgac ctttttccccaaggacgagaagatttactcggacaaaggctgtaaaaccgtgcagaccaagctggatttctattaaggac cctggggatctatgtctcctttttaagagtcccaaaaccaggggagaaaatctatgcaacgatttctcttatttgtgcac ttttt |
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Protein
| Protein ID | habu1_s997_g03493.t1 |
|---|---|
| Definition | - |
>habu1_s997_g03493.t1 MLRPAGLLALLLLGALRSAALEPVSVSLAIGAASMLTGYLSSPRFYCAFVECCPPDDHRPDPAALQQALDERLFGQHLAQ GVILKALTGFINNPNPKKPLVLSLHGWAGTGKNFVSQIIAENLYPAGLKSKFVHLFLSTLHFPHEHLVPLYKDQLQKWIR GNVSSCAKSLFIFDEMDKLHPGLIDAIKPFLDYYEQIDGVSYRRAIFIFLSNAGGDLITKVALDFWRSGQEREKIGLKDL EVVLSLGVFNNRNSGLWHSSLIDRNLIDYFVPFLPLEYKHVKMCIRAEMKSRSNPINEEIVNQVANEMTFFPKDEKIYSD KGCKTVQTKLDFY |
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