Gene
| Gene Model ID | habu1_s997_g03507 |
|---|---|
| Locus | habu1_scaffold997 : 614710 ... 633990 : - |
| To GenomeBrowser | habu1_scaffold997:614710..633990 |
| Genes list of scaffold | habu1_scaffold997 |
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| leucine-rich repeat-containing protein 8a | GO:0005253 GO:0005886 GO:0006884 GO:0006970 GO:0009986 GO:0034702 GO:0098656 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| habu1_s997_g03507.t1 | 2 | 1 | DUF3733 | 1 | 62 | 0.0 | 162.6 | 2.2e-32 | 5.5e-29 | 99.2 |
| habu1_s997_g03507.t1 | 2 | 2 | DUF3733 | 98 | 156 | 0.0 | 162.6 | 1.8e-22 | 4.5e-19 | 67.4 |
| habu1_s997_g03507.t1 | 5 | 1 | LRR_8 | 470 | 526 | 1.7e-35 | 120.5 | 4.8e-06 | 0.012 | 15.3 |
| habu1_s997_g03507.t1 | 5 | 1 | LRR_4 | 493 | 526 | 1.0e-35 | 120.7 | 2.1e-08 | 5.1e-05 | 22.7 |
| habu1_s997_g03507.t1 | 5 | 2 | LRR_8 | 545 | 598 | 1.7e-35 | 120.5 | 1.6e-07 | 0.00039 | 20.1 |
| habu1_s997_g03507.t1 | 5 | 2 | LRR_4 | 592 | 631 | 1.0e-35 | 120.7 | 4.4e-09 | 1.1e-05 | 24.9 |
| habu1_s997_g03507.t1 | 5 | 3 | LRR_8 | 592 | 651 | 1.7e-35 | 120.5 | 4.5e-17 | 1.1e-13 | 50.6 |
| habu1_s997_g03507.t1 | 5 | 3 | LRR_4 | 640 | 678 | 1.0e-35 | 120.7 | 1.5e-11 | 3.7e-08 | 32.8 |
| habu1_s997_g03507.t1 | 5 | 4 | LRR_8 | 662 | 713 | 1.7e-35 | 120.5 | 3.4e-13 | 8.5e-10 | 38.2 |
| habu1_s997_g03507.t1 | 5 | 4 | LRR_4 | 686 | 725 | 1.0e-35 | 120.7 | 1.9e-09 | 4.8e-06 | 26.0 |
| habu1_s997_g03507.t1 | 1 | 1 | LRR_1 | 686 | 707 | 2.8e-10 | 38.7 | 3.8e-06 | 0.0095 | 15.8 |
| habu1_s997_g03507.t1 | 5 | 5 | LRR_8 | 709 | 766 | 1.7e-35 | 120.5 | 1.7e-09 | 4.3e-06 | 26.3 |
| habu1_s997_g03507.t1 | 5 | 5 | LRR_4 | 734 | 770 | 1.0e-35 | 120.7 | 3.8e-08 | 9.3e-05 | 21.9 |
| habu1_s997_g03507.t1 | 1 | 1 | PhyH | 798 | 1045 | 0.0 | 203.9 | 0.0 | 0.0 | 203.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| habu1_s997_g03507.t1 | gi|602655343|ref|XP_007433421.1| | PREDICTED: leucine-rich repeat-containing protein 8A [Python bivittatus] | 0.0 |
| habu1_s997_g03507.t1 | gi|327291512|ref|XP_003230465.1| | PREDICTED: leucine-rich repeat-containing protein 8A [Anolis carolinensis] | 0.0 |
| habu1_s997_g03507.t1 | gi|591372885|ref|XP_007061143.1| | PREDICTED: leucine-rich repeat-containing protein 8A isoform X1 [Chelonia mydas] | 0.0 |
| habu1_s997_g03507.t1 | gi|641764679|ref|XP_008167436.1| | PREDICTED: leucine-rich repeat-containing protein 8A [Chrysemys picta bellii] | 0.0 |
| habu1_s997_g03507.t1 | gi|697512319|ref|XP_009683319.1| | PREDICTED: volume-regulated anion channel subunit LRRC8A [Struthio camelus australis] | 0.0 |
Expression profile
| Libraries | FPKM |
|---|---|
| >Adult | |
| Venom fang forming tissue | 5.2 |
| Venom grand-1 | 45.4 |
| Pit, infrared sensing | 9.6 |
| Nose | 5.9 |
| Brain-1 | 4.1 |
| Eye | 6.6 |
| fetal fibroblast | 5.4 |
| venom gland-2 | 14.4 |
| Brain-2 | 6.0 |
| Spleen | 2.8 |
| Lung | 4.5 |
| Liver | 16.8 |
| Kidney | 28.2 |
| Pancreas | 2.9 |
| Small intestine | 1.2 |
| Large intestine | 1.9 |
| Stomach | 4.4 |
| heart | 4.0 |
| ovary | 6.5 |
| cheek muscle | 4.2 |
Transcript
| Transcript ID | habu1_s997_g03507.t1 |
|---|---|
| Definition | - |
>habu1_s997_g03507.t1 ttctgacaagcaaagtcaatggggaagccagattcacttaataaccatgtttctatcttaatgactgcagtgactcactt aaaacaactatggcaagaaaggtgagccatgattcccgtcacggaattgcgctactttgccgacacccagccggcgtacc gtatcctgaagccctggtgggatgtctttacggactacatctccatcgtgatgctaatgatcgcagtgtttggtgggacc ctccaggtcacccaggacaaaatgatctgcttgccttgcaaatgggttaccaaagatgcttgcaacgattcttcccgcga atggacggcggcaaacgtggacgccagttactataatgcttctctggggccctctgtggagcctgggcccaccgggatca aatatgagcttgaccgtcaccaatataactacgtggacgccgtgtgttacgaaaaccgccttcactggtttgccaaatat ttcccctacctcgtcctgctgcacaccctcatcttcctggcttgtagcaacttctggttcaagttccccagaaccagctc caagctggagcactttgtctccatcctcctaaaatgctttgactctccctggaccacgcgggctctgtccgagacggtgg tggaggaaagcgatccgaagccggcctttgggaagatgaacggctctatggagaagaagtcttccaacgtcagtgaggat gtggaagccactgccccaatgctgcagaggaccaagtctcggattgagcaagggatcgtggaccgcacggagaacggcgt cctggacaagaaggaaggggagcaggccaaagctctctttgagaaggtcaagaagttccggacccacgtggaagaaggag acattgtctaccgcctctacatgaggcaaaccatcatcaaggtcatcaagttcatcctcatcatttgctacacggtctac tacgtcaacaacataaccttcgacattgactgcaaagtggacatcgagagtctgaccggctaccgcatgtatcgctgcgc tcaccccctggcgaccctcttcaagatcttagcgtccttctacatcagcctggtggtcctctacggcctgatctgcatgt ataccctgtggtggatgctccggagatccctcaagaagtactcctttgagtccatccgagaggagagcagctacagcgac attcccgacgtcaagaacgactttgccttcatgctccacctgattgaccagtatgaccctctctactccaagcgcttcgc ggtcttcctgtcggaggtgagcgagaacaagctccggcagttgaacctgaacaacgaatggaccttggagaagctgcgcc aaaggatcaccaagaactcccaggagaagctggagctgcaccttttcatgctcagcggcatccccgacacagtctttgac ctggtggagctggaggtcttaaaactggagctcattcctgacgtcaccatcccgcccagcatcgcccagctcaccagcct caaggaactgtggctgtaccacacggcggccaaaattgaggcaccagctctggccttcttgagggagaacctgaaatcct tgcacatcaagttcacggacatcaaggagattccgttgtggatttacagcctgaagacgctggaagagcttcacctgacg gggaacttgagtgctgaaaacaaccggtacatcgtgatcgatggtctacgggagctgaagaggctcaaagtgttgaggct gaagagtaacctgaccaagctgccccaggtggtgacggacgtgggggtccatctccagaagctgtccatcaacaacgagg gcaccaagctgatggtcctcaacagcctgaagaagatggtcaacttgacggaactggaactcatccgctgcgacctggag cgcatccctcactccatcttcagcctccacaacctgcaggagatcgacctcaaggacaacaacctcaagaccatcgagga gatcatcagcttccagcacctccatcgcctcacttgccttaaactctggtacaaccaaattgcctacatccccgtgcaga tcggcaacctcaccaacctggagcgcctttacctgaaccggaacaagattgagaagatccccacccaactcttcttctgc cggaaacttcgctacctggatctcagccacaacctgttgacttgcataccggcggaaatcggagcgttgcagaatttgca gaacctggcggtgacagccaacaggatcgaggctctccccgccgagctgttccagtgccggaaaacaaggactttgcacc tgggcaacaacgtcctgcagtcgctgccttcccgggtgggcgagctgaccaacctgtctcagatcgaactgcgcggcaac cgcctggagtgcctgccggtggagctgggcgactgccccttgctgaagcgcagcgggctggtggtggaggaagacctctt caacaccctgcccttggagttccaccaggagggcttcttggtcctcgaacggttcttcagcctggaggaatgtgacgcca tgagggcccagatccgaaagatagtggcatctatggacgtgccggcccactgccgcacggagttttcaacccaggagtcg gaacagctccaggcacaggggtctgccgaatatttcctcaacagcggagacaaaatcagattctttttcgaaaaaggtgt ttttgatgaaaaaggggactgtctcgttgcaaaggagaaatcggtcaacaaaattggtcacgcactgcatgcctacgatc cggtcttcaagcaaatgacccacgcagccaaggtgcaggctttggcaagaaatttgggtctggaaaatcctgtggtggtg caaagcatgtacatcttcaagcaaccgggcattggtggggaagtgaccccacaccaggatgcgactttcttgcacacaag ccctttgggcaaagtgatgggcctctgggtcgctctggaaaacgccacccaaggaaacggctgtttgtggttcattcccg gctctcacacaactggcatcacgcggcagatggtccgaactccccctgggacgattccttgcaccgatttcattggcacg gagcgaacgtatgacgactgccagtttgtccctgtgccagcgggcaaaggggacctagtcctcatccacggcgaggtggt gcacaagagtgaagcgaactattctgaagagtcccgcgaggcttacaccttccacctgatggaggacaaggatgctgttt ggagcgctgagaactggcttcaaccaactctggagctgcctttcccatcgctctacacgtgcaactaaacccgcagaatc tctccttcgggacccccacccctctcggggaaccggcgggggctgatcttcggctctgcatctgtaactggggaatttca tctctgaatccgctgagtctgctctggagagcatgagcttaaaaaatcagtttgccgtggaattaaagcatcagttcgtg accaaggaaagtcggactgtagttcttgctcagcaatcatccgtcacagggacgttgtgaaggagaaggagacatgcagg gagccagcactgctccgggcttctgacaggagaggcgagttagaaatgcaataaaatgcggactggaattccgacta |
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Protein
| Protein ID | habu1_s997_g03507.t1 |
|---|---|
| Definition | - |
>habu1_s997_g03507.t1 MIPVTELRYFADTQPAYRILKPWWDVFTDYISIVMLMIAVFGGTLQVTQDKMICLPCKWVTKDACNDSSREWTAANVDAS YYNASLGPSVEPGPTGIKYELDRHQYNYVDAVCYENRLHWFAKYFPYLVLLHTLIFLACSNFWFKFPRTSSKLEHFVSIL LKCFDSPWTTRALSETVVEESDPKPAFGKMNGSMEKKSSNVSEDVEATAPMLQRTKSRIEQGIVDRTENGVLDKKEGEQA KALFEKVKKFRTHVEEGDIVYRLYMRQTIIKVIKFILIICYTVYYVNNITFDIDCKVDIESLTGYRMYRCAHPLATLFKI LASFYISLVVLYGLICMYTLWWMLRRSLKKYSFESIREESSYSDIPDVKNDFAFMLHLIDQYDPLYSKRFAVFLSEVSEN KLRQLNLNNEWTLEKLRQRITKNSQEKLELHLFMLSGIPDTVFDLVELEVLKLELIPDVTIPPSIAQLTSLKELWLYHTA AKIEAPALAFLRENLKSLHIKFTDIKEIPLWIYSLKTLEELHLTGNLSAENNRYIVIDGLRELKRLKVLRLKSNLTKLPQ VVTDVGVHLQKLSINNEGTKLMVLNSLKKMVNLTELELIRCDLERIPHSIFSLHNLQEIDLKDNNLKTIEEIISFQHLHR LTCLKLWYNQIAYIPVQIGNLTNLERLYLNRNKIEKIPTQLFFCRKLRYLDLSHNLLTCIPAEIGALQNLQNLAVTANRI EALPAELFQCRKTRTLHLGNNVLQSLPSRVGELTNLSQIELRGNRLECLPVELGDCPLLKRSGLVVEEDLFNTLPLEFHQ EGFLVLERFFSLEECDAMRAQIRKIVASMDVPAHCRTEFSTQESEQLQAQGSAEYFLNSGDKIRFFFEKGVFDEKGDCLV AKEKSVNKIGHALHAYDPVFKQMTHAAKVQALARNLGLENPVVVQSMYIFKQPGIGGEVTPHQDATFLHTSPLGKVMGLW VALENATQGNGCLWFIPGSHTTGITRQMVRTPPGTIPCTDFIGTERTYDDCQFVPVPAGKGDLVLIHGEVVHKSEANYSE ESREAYTFHLMEDKDAVWSAENWLQPTLELPFPSLYTCN |
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