publication
For those who utilize our genome and transcriptome data, please cite:
Luo YJ, Takeuchi T, Koyanagi R, Yamada L, Kanda M, Khalturina M, Fujie M, Yamasaki S, Endo K, Satoh N
The Lingula genome provides insights into brachiopod evolution and the origin of phosphate biomineralization.
Nature Communications, 6, 8301. (2015) DOI:10.1038/ncomms9301
The Lingula genome provides insights into brachiopod evolution and the origin of phosphate biomineralization.
Nature Communications, 6, 8301. (2015) DOI:10.1038/ncomms9301
Assembled genome v1.0
| lingula_genome_v1.0_unmasked.fa.gz | Unmasked genome assembly |
| lingula_genome_v1.0_masked.fa.gz | Masked genome assembly. |
Assembled Transcriptome v1.0
| lingula_transcriptome_v1.0_nucl.fa.gz | Nucleotide sequences of transcripts. |
| lingula_transcriptome_v1.0_prot.fa.gz | Amino acid sequences of transcripts. |
| lingula_transcriptome_v1.0_Swiss-Prot.outfmt6.gz | BLASTP results of the transcriptome against Swiss-Prot database. |
Gene model v1.0
| lingula_genome_v1.0_masked.gff.gz | Annotation of the masked genome in general feature format (GFF). |
| lingula_genome_v1.0_nucl.fa.gz | Nucleotide sequences of predicted gene models from the masked genome. |
| lingula_genome_v1.0_prot.fa.gz | Amino acid sequences of predicted gene models from the masked genome. |
| lingula_genome_v1.0_Swiss-Prot.outfmt6.gz | Annotation of putative orthologs as BLASTP results against Swiss-Prot database (in tabular "outfmt6" output format). |
| lingula_genome_v1.0_Pfam.domtblout.gz | Annotation of protein domains by a HMMER search against Pfam database (using hmmscan in "domtblout" output format). |
| lingula_v1.0_prot_UniProt.fa.gz | Amino acid sequences (proteome) of predicted gene models in UniProt style (e.g., lan|00001_LINAN; lowercase three-letter unique species identifier|serial number_uppercase five-letter unique species identifier). This format is ready for OrthoMCL analysis. Serial number corresponds to the original gene id. For example "lan|00001_LINAN" is equal to "g1.t1" in the genome browser. |
| lingula_v1.0_prot_UniProt_Pfam.tblout.gz | Proteome (UniProt style) annotation of protein domains by a HMMER search against Pfam database (using hmmsearch in "tblout" output format). |
| lingula_v1.0_prot_UniProt_Swiss-Prot.outfmt6.gz | BLASTP results of the proteome (UniProt style) against Swiss-Prot database (in tabular "outfmt6" output format). |
Raw data
| PRJNA286275 | Link to NCBI BioProject |