Lingula anatina ver. 1.0

OIST Marine Genomics Unit since 2008

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publication
For those who utilize our genome and transcriptome data, please cite:
Luo YJ, Takeuchi T, Koyanagi R, Yamada L, Kanda M, Khalturina M, Fujie M, Yamasaki S, Endo K, Satoh N
The Lingula genome provides insights into brachiopod evolution and the origin of phosphate biomineralization.
Nature Communications, 6, 8301. (2015) DOI:10.1038/ncomms9301 Pubmed
Assembled genome v1.0
lingula_genome_v1.0_unmasked.fa.gz Unmasked genome assembly
lingula_genome_v1.0_masked.fa.gz Masked genome assembly.

Assembled Transcriptome v1.0
lingula_transcriptome_v1.0_nucl.fa.gz Nucleotide sequences of transcripts.
lingula_transcriptome_v1.0_prot.fa.gz Amino acid sequences of transcripts.
lingula_transcriptome_v1.0_Swiss-Prot.outfmt6.gz BLASTP results of the transcriptome against Swiss-Prot database.

Gene model v1.0
lingula_genome_v1.0_masked.gff.gz Annotation of the masked genome in general feature format (GFF).
lingula_genome_v1.0_nucl.fa.gz Nucleotide sequences of predicted gene models from the masked genome.
lingula_genome_v1.0_prot.fa.gz Amino acid sequences of predicted gene models from the masked genome.
lingula_genome_v1.0_Swiss-Prot.outfmt6.gz Annotation of putative orthologs as BLASTP results against Swiss-Prot database (in tabular "outfmt6" output format).
lingula_genome_v1.0_Pfam.domtblout.gz Annotation of protein domains by a HMMER search against Pfam database (using hmmscan in "domtblout" output format).
lingula_v1.0_prot_UniProt.fa.gz Amino acid sequences (proteome) of predicted gene models in UniProt style (e.g., lan|00001_LINAN; lowercase three-letter unique species identifier|serial number_uppercase five-letter unique species identifier). This format is ready for OrthoMCL analysis. Serial number corresponds to the original gene id. For example "lan|00001_LINAN" is equal to "g1.t1" in the genome browser.
lingula_v1.0_prot_UniProt_Pfam.tblout.gz Proteome (UniProt style) annotation of protein domains by a HMMER search against Pfam database (using hmmsearch in "tblout" output format).
lingula_v1.0_prot_UniProt_Swiss-Prot.outfmt6.gz BLASTP results of the proteome (UniProt style) against Swiss-Prot database (in tabular "outfmt6" output format).

Raw data
PRJNA286275 Link to NCBI BioProject

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