Gene
| Gene Model ID | pfu_aug1.0_1.1_00002 |
|---|---|
| Locus | scaffold1.1 : 15106 ... 61751 : + |
| To GenomeBrowser | scaffold1.1:15106..61751 |
| Genes list of scaffold | scaffold1.1 |
| Synonym | pfu_aug2.0_3090.1_02324 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1.1_00002.t1 | 3 | 1 | WD40 | 181 | 216 | 2.5e-20 | 71.5 | 4.3e-12 | 6.3e-08 | 32.2 |
| pfu_aug1.0_1.1_00002.t1 | 3 | 2 | WD40 | 270 | 314 | 2.5e-20 | 71.5 | 1.0e-08 | 0.00015 | 21.4 |
| pfu_aug1.0_1.1_00002.t1 | 3 | 3 | WD40 | 385 | 416 | 2.5e-20 | 71.5 | 1.5e-06 | 0.022 | 14.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1.1_00002.t1 | gi|260813991|ref|XP_002601699.1| | hypothetical protein BRAFLDRAFT_127384 [Branchiostoma floridae] | 7.0e-30 |
Transcript
| Transcript ID | pfu_aug1.0_1.1_00002.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1.1_00002.t1 atggaagaggaggaggaagaaaaatgggacaagatccgagcttgggactctgtacagcaggatatacgatcccgacttaa tgagccggaaaaattcgaccaatcaatgaccctcaatcatggacctcagctattccacactctccgtcatgcctccagta ttaaatgtatgactcatttcacgagtacaattggcgataacttcatgacacattatcgtatcggtaccgtcgaccatctt agtttgtgggcgttagagtccaaggaaagagatgccgtgtccaagcataacagcatgtcatattgtaaagacactaatga agtgtttgctggtggaattggaaccttggagaaatggagggtcaaggggtcagaacattctgcagtggccactagaggtg aaaaatttgaccttgaacttcgatcagatgagtgggtgatagatgtgaaggtcgaccctcgtaacaaacagctgctggcc ttgacctacgatggcatctacgtggcaaattatcaggtatggaacgctgtcgtattttcccaagtacacgtcttttatgg acatcgtgacgctatcacagctctacaggtccataagacagatcctttgttattctcctcatcactggacggcaccgtgc aaatatggaggatggataacttctgtaaattctaccatctttacgccccggtagagtcgtcagtgtataaacttcagctc tgccaaggatctaaaactcatcctagcaggatcatttgctctactgagatagccttgatggaggctgcaaactgcgtaat ggtgaaaaacgtgcaagctcacgagggcgccattacatgcatggagtatgccacagaaattgacgggtcaggattccaga tgatggaaacgagtaaaacacttgtgacagggggagatgactctttcctgaaaatttggaatatcgttattgtacctggt catactggagatcagatctcgttagaagttattcttaagatacactgtaagagtccaccacagtacgtctgtatgtatga gaatacactgtgtttgaccttgtcacgcaccaaggaaagtagattagacagctcagaccctggaaatcctggggcacccc tacaatatacacaactacaccatgctgctgatgaagatcacactacccagataacagcggtagataaatgtcccctatta ggcctctttgtgacgtcaggagttgatggctacattaaagtatggaacagacacaatcagttagtgagggagatgggatt cggggagcctctgtttggactttgcttcgccaatccacgtggagatctgctggtcggctaccaaaatcatgtctgtctga tcccactgacaagtttctttcctcataattatctggaacgtataacgctacagaattttaaggacgaaagcaaagaaaac gttattccatataatccaagagtcaaaccatggtttgatgcaaagaagctgcccaagttcagtacgtctttatcagtgag gacacaagagaggaatagacctgaacctgaggagatcctcgaggacttagaggcagaggaggaggagagggaggagcaag ccaggaggaggctggaggaggagaggaccattatagaggaagaaatcctcaggagattagagaagaggaggttagatagg gctttcagagattcacatcgtccaatcacaagagaggaaacggaggccacttcattcctaggttcaccaactccatcaga agaagaggcgcttaaatcacccgctcatacacctgagggtattactcttagaaaggtggggcaaacaacctcgaaggcgg ggcaaataacatcaaggggaggagctacaacaccagggacaggaggtgtggttccaaaaggtggagctttaacacctagg ccagggacaatcacacccaggggaggagggtcagtctttaagcccggacccaggggaagtcaggagggattaattacctc ccctgacacctccattgatgcagattttgagtttgatattgacactccccgctctataaagaagaagaaaacagtgaagt ttgagaagaaagaagataaaggaagaagagggtcaggcatggcaaatttacacctgcttacaccgtttgaacgggccttg ttaaagaggaaacctattatagcactcgatgaagaatatgcattttcaggttatataccaaattctgtaatacgtaaaca gctcggcttccgccctcccaccccacctatgatgccacccagtagagaagtctggacaccaaaacctgtgccagtaccaa aaccaagtcatgtaccaggatatgaggaagaggaaccaatggatctgtacgagcttgctaagcgtttcaagatgtaccta agtgactcggaggaagagtcagtctatcattggtccgattctgacggtgacgttaacgaacgtccctgtcacggacaaaa aaggggacgtggcaaacgtaagaaaaaacagcgaagggaaataggttctgatgatggttggagcgatgatgatgagagta atcaggtagatgacgatgatgtcgatgaagtagacgattttatagatgatttgcatgatgagtctggtgcagaggaccag aaaccattcttttggggtgacggaggggaagagccgactaaaacgccgcttcaacaactaaagaaagtaacagggatggt gaggaccatatcaaatctgtcgtcaacgtcgtcaaaacggcagttcaaacctcaaagtcgtagatctacacccggaactc cagggaaatatgaattgaagtccagagcttttcagtttggtggaatggaaatggattttggattaggaactccagattca atccgtggattccgcaccaagtccggcggaccaaacagccgggagcggactaaatcattcaatctcaccaacatgatagt agatgaaaactcgactaatgttaaattcaaggaggagactggaaaaggtaaaaggaaagtgccgtcagacatggaggtca tacacaagcttctgaaggaggactttttccgtgacgtgaaaggcgcgtcaccgtcgtttgatagcattctccagcgatta cttaccatgctggacactgaagacgctgatgtacacagtaaagtctgtgattatattctagatcttcataggtga |
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Protein
| Protein ID | pfu_aug1.0_1.1_00002.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1.1_00002.t1 MEEEEEEKWDKIRAWDSVQQDIRSRLNEPEKFDQSMTLNHGPQLFHTLRHASSIKCMTHFTSTIGDNFMTHYRIGTVDHL SLWALESKERDAVSKHNSMSYCKDTNEVFAGGIGTLEKWRVKGSEHSAVATRGEKFDLELRSDEWVIDVKVDPRNKQLLA LTYDGIYVANYQVWNAVVFSQVHVFYGHRDAITALQVHKTDPLLFSSSLDGTVQIWRMDNFCKFYHLYAPVESSVYKLQL CQGSKTHPSRIICSTEIALMEAANCVMVKNVQAHEGAITCMEYATEIDGSGFQMMETSKTLVTGGDDSFLKIWNIVIVPG HTGDQISLEVILKIHCKSPPQYVCMYENTLCLTLSRTKESRLDSSDPGNPGAPLQYTQLHHAADEDHTTQITAVDKCPLL GLFVTSGVDGYIKVWNRHNQLVREMGFGEPLFGLCFANPRGDLLVGYQNHVCLIPLTSFFPHNYLERITLQNFKDESKEN VIPYNPRVKPWFDAKKLPKFSTSLSVRTQERNRPEPEEILEDLEAEEEEREEQARRRLEEERTIIEEEILRRLEKRRLDR AFRDSHRPITREETEATSFLGSPTPSEEEALKSPAHTPEGITLRKVGQTTSKAGQITSRGGATTPGTGGVVPKGGALTPR PGTITPRGGGSVFKPGPRGSQEGLITSPDTSIDADFEFDIDTPRSIKKKKTVKFEKKEDKGRRGSGMANLHLLTPFERAL LKRKPIIALDEEYAFSGYIPNSVIRKQLGFRPPTPPMMPPSREVWTPKPVPVPKPSHVPGYEEEEPMDLYELAKRFKMYL SDSEEESVYHWSDSDGDVNERPCHGQKRGRGKRKKKQRREIGSDDGWSDDDESNQVDDDDVDEVDDFIDDLHDESGAEDQ KPFFWGDGGEEPTKTPLQQLKKVTGMVRTISNLSSTSSKRQFKPQSRRSTPGTPGKYELKSRAFQFGGMEMDFGLGTPDS IRGFRTKSGGPNSRERTKSFNLTNMIVDENSTNVKFKEETGKGKRKVPSDMEVIHKLLKEDFFRDVKGASPSFDSILQRL LTMLDTEDADVHSKVCDYILDLHR |
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