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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_1.1_00008
Locus scaffold1.1 : 111038 ... 114735 : -
To GenomeBrowser scaffold1.1:111038..114735
Genes list of scaffold scaffold1.1
Synonym pfu_aug2.0_1215.1_18188

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_1.1_00008.t1 5 1 Hexapep 40 54 2.6e-08 33.0 0.0012 9.1 5.9
pfu_aug1.0_1.1_00008.t1 5 2 Hexapep 70 95 2.6e-08 33.0 3.0e-05 0.22 11.0
pfu_aug1.0_1.1_00008.t1 5 3 Hexapep 102 128 2.6e-08 33.0 3.2e-05 0.23 11.0
pfu_aug1.0_1.1_00008.t1 5 4 Hexapep 138 164 2.6e-08 33.0 2.3e-06 0.017 14.5
pfu_aug1.0_1.1_00008.t1 5 5 Hexapep 169 187 2.6e-08 33.0 0.0025 19.0 4.9

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_1.1_00008.t1 gi|342829750|gb|EGU64098.1| clumping factor A family protein [Streptococcus parasanguinis SK236] 8.0e-22

Transcript
Transcript IDpfu_aug1.0_1.1_00008.t1
Definition-
>pfu_aug1.0_1.1_00008.t1
atgcaccaggatgtccacaccaaccaggatgtccacatcgaccaatcgaccaggatgtccgcattgatcaggatgatcac
actgaccagaaagcccagatcgaaaacttttaaggttgtccacatcgataaggatgtccacatcgacaaagatgtccaca
tcgacaaggatgatgtccacatcgacaaggatgttcacaacaacaaggatgtccacatcgacaaggatgtcaagaccgac
aaggatgtccacatcgacaaagatgtccacatcgacaaggatgtcaacaccgacaaagatgtccacatccacatcgacaa
cgatgtccacaccgacaaggatgcccacatcgacaaggatgtccacatcgacaaggatgtccacaccgacaaggatgtcc
acacggacaaagatgtccacatcgacaacgatgtccacaccgacatgaatgtccacatcaataaggatgtccacatcaac
aaggatgtccacaccgacaaggatgccaacatcgacaacgatgtccacaccgacaaggatgtccacatcgacaaggatgt
ccacaccgacaaggatgcccacaccgacaaggatgtcactccaagtaggcctacttga

Protein
Protein IDpfu_aug1.0_1.1_00008.t1
Definition-
>pfu_aug1.0_1.1_00008.t1
MHQDVHTNQDVHIDQSTRMSALIRMITLTRKPRSKTFKVVHIDKDVHIDKDVHIDKDDVHIDKDVHNNKDVHIDKDVKTD
KDVHIDKDVHIDKDVNTDKDVHIHIDNDVHTDKDAHIDKDVHIDKDVHTDKDVHTDKDVHIDNDVHTDMNVHINKDVHIN
KDVHTDKDANIDNDVHTDKDVHIDKDVHTDKDAHTDKDVTPSRPT

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