Gene
| Gene Model ID | pfu_aug1.0_1.1_00010 |
|---|---|
| Locus | scaffold1.1 : 127730 ... 131955 : - |
| To GenomeBrowser | scaffold1.1:127730..131955 |
| Genes list of scaffold | scaffold1.1 |
| Synonym | pfu_aug2.0_1215.1_18187 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1.1_00010.t1 | 3 | 1 | SPARC_Ca_bdg | 11 | 73 | 1.9e-06 | 27.8 | 1.5e-05 | 0.018 | 15.0 |
| pfu_aug1.0_1.1_00010.t1 | 5 | 1 | EF-hand_5 | 18 | 38 | 2.4e-18 | 64.5 | 9.4e-07 | 0.0012 | 18.1 |
| pfu_aug1.0_1.1_00010.t1 | 6 | 1 | EF-hand_1 | 19 | 39 | 7.3e-30 | 99.9 | 6.0e-07 | 0.00074 | 18.6 |
| pfu_aug1.0_1.1_00010.t1 | 6 | 1 | EF-hand_6 | 19 | 41 | 5.6e-28 | 94.2 | 6.3e-06 | 0.0078 | 16.0 |
| pfu_aug1.0_1.1_00010.t1 | 3 | 1 | EF-hand_7 | 19 | 75 | 2.4e-26 | 91.6 | 2.6e-14 | 3.2e-11 | 43.1 |
| pfu_aug1.0_1.1_00010.t1 | 4 | 1 | EF-hand_8 | 19 | 40 | 5.4e-19 | 67.5 | 0.00017 | 0.21 | 11.2 |
| pfu_aug1.0_1.1_00010.t1 | 4 | 1 | EF-hand_10 | 19 | 35 | 2.2e-07 | 30.4 | 0.0018 | 2.3 | 7.9 |
| pfu_aug1.0_1.1_00010.t1 | 4 | 2 | EF-hand_8 | 40 | 75 | 5.4e-19 | 67.5 | 8.9e-08 | 0.00011 | 21.7 |
| pfu_aug1.0_1.1_00010.t1 | 4 | 2 | EF-hand_10 | 43 | 72 | 2.2e-07 | 30.4 | 0.00036 | 0.44 | 10.2 |
| pfu_aug1.0_1.1_00010.t1 | 6 | 2 | EF-hand_1 | 50 | 77 | 7.3e-30 | 99.9 | 1.7e-10 | 2.1e-07 | 29.7 |
| pfu_aug1.0_1.1_00010.t1 | 6 | 2 | EF-hand_6 | 51 | 76 | 5.6e-28 | 94.2 | 1.0e-07 | 0.00012 | 21.6 |
| pfu_aug1.0_1.1_00010.t1 | 5 | 2 | EF-hand_5 | 53 | 73 | 2.4e-18 | 64.5 | 0.00052 | 0.65 | 9.4 |
| pfu_aug1.0_1.1_00010.t1 | 6 | 3 | EF-hand_1 | 88 | 113 | 7.3e-30 | 99.9 | 7.8e-09 | 9.7e-06 | 24.5 |
| pfu_aug1.0_1.1_00010.t1 | 6 | 3 | EF-hand_6 | 88 | 112 | 5.6e-28 | 94.2 | 5.3e-09 | 6.5e-06 | 25.5 |
| pfu_aug1.0_1.1_00010.t1 | 3 | 2 | EF-hand_7 | 88 | 148 | 2.4e-26 | 91.6 | 1.4e-11 | 1.8e-08 | 34.3 |
| pfu_aug1.0_1.1_00010.t1 | 5 | 3 | EF-hand_5 | 88 | 108 | 2.4e-18 | 64.5 | 2.0e-06 | 0.0024 | 17.1 |
| pfu_aug1.0_1.1_00010.t1 | 4 | 3 | EF-hand_8 | 89 | 112 | 5.4e-19 | 67.5 | 1.5e-05 | 0.019 | 14.5 |
| pfu_aug1.0_1.1_00010.t1 | 4 | 3 | EF-hand_10 | 89 | 109 | 2.2e-07 | 30.4 | 0.019 | 23.0 | 4.7 |
| pfu_aug1.0_1.1_00010.t1 | 3 | 2 | SPARC_Ca_bdg | 91 | 112 | 1.9e-06 | 27.8 | 0.045 | 55.0 | 3.8 |
| pfu_aug1.0_1.1_00010.t1 | 6 | 4 | EF-hand_1 | 134 | 150 | 7.3e-30 | 99.9 | 0.0003 | 0.37 | 10.2 |
| pfu_aug1.0_1.1_00010.t1 | 6 | 4 | EF-hand_6 | 134 | 149 | 5.6e-28 | 94.2 | 0.011 | 14.0 | 5.9 |
| pfu_aug1.0_1.1_00010.t1 | 3 | 3 | SPARC_Ca_bdg | 137 | 177 | 1.9e-06 | 27.8 | 0.0034 | 4.2 | 7.4 |
| pfu_aug1.0_1.1_00010.t1 | 4 | 4 | EF-hand_8 | 138 | 183 | 5.4e-19 | 67.5 | 7.8e-08 | 9.6e-05 | 21.9 |
| pfu_aug1.0_1.1_00010.t1 | 5 | 4 | EF-hand_5 | 139 | 146 | 2.4e-18 | 64.5 | 0.22 | 270.0 | 1.1 |
| pfu_aug1.0_1.1_00010.t1 | 6 | 5 | EF-hand_6 | 158 | 184 | 5.6e-28 | 94.2 | 1.4e-07 | 0.00017 | 21.2 |
| pfu_aug1.0_1.1_00010.t1 | 6 | 5 | EF-hand_1 | 159 | 184 | 7.3e-30 | 99.9 | 7.1e-08 | 8.8e-05 | 21.5 |
| pfu_aug1.0_1.1_00010.t1 | 3 | 3 | EF-hand_7 | 159 | 219 | 2.4e-26 | 91.6 | 4.6e-07 | 0.00057 | 19.9 |
| pfu_aug1.0_1.1_00010.t1 | 5 | 5 | EF-hand_5 | 159 | 178 | 2.4e-18 | 64.5 | 6.4e-08 | 8.0e-05 | 21.8 |
| pfu_aug1.0_1.1_00010.t1 | 4 | 4 | EF-hand_10 | 159 | 178 | 2.2e-07 | 30.4 | 0.0031 | 3.8 | 7.2 |
| pfu_aug1.0_1.1_00010.t1 | 6 | 6 | EF-hand_6 | 207 | 220 | 5.6e-28 | 94.2 | 0.45 | 550.0 | 0.9 |
| pfu_aug1.0_1.1_00010.t1 | 6 | 6 | EF-hand_1 | 209 | 219 | 7.3e-30 | 99.9 | 0.4 | 500.0 | 0.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1.1_00010.t1 | gi|53801337|gb|AAU93878.1| | calcium-dependent protein kinase [Crassostrea gigas] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| adductorMuscle | 2 |
Transcript
| Transcript ID | pfu_aug1.0_1.1_00010.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1.1_00010.t1 atggcgaacgtatctgcctgggcgcagcgacatctatctagagtggagagcgattttaaggaggcggacaaagacaaaag cggagctttggattttcaggaagtgtacaatgtcctccttaagtcgggttttaagggatcacaggatgaagcaaaggaaa tattcaaagaggttgacacggacaaaaacaagaaaatttcaaggaacgaattcaccaaagcgatgtcaaatgtgcctcca atagactttaaggagatcgttttgaggagagctttcaagaagttggacactgacggtagtgggtacctaaccatgaatga gatcatggacgccacaaaatctgatgctggaatcgatgtagccgcagaaaagatagcagaactagagatatacctgataa aggatgccgacaaaaagataagctatgaagaatttctatccgtctacgtcaagaaaaagaacgtgtctgccatggagacg cttttcgataaattggacacggataaaagcggaaaactgagtcgtcaagaaattctggacggattaaaacgggaccaaga gctccaacttcaggccaagaaaatatcgggcatcttgatcaactggtgcaaagggacggaccatgaactggattacaggg agtttataaaagcctacgaggaccataggcactga |
|
Protein
| Protein ID | pfu_aug1.0_1.1_00010.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1.1_00010.t1 MANVSAWAQRHLSRVESDFKEADKDKSGALDFQEVYNVLLKSGFKGSQDEAKEIFKEVDTDKNKKISRNEFTKAMSNVPP IDFKEIVLRRAFKKLDTDGSGYLTMNEIMDATKSDAGIDVAAEKIAELEIYLIKDADKKISYEEFLSVYVKKKNVSAMET LFDKLDTDKSGKLSRQEILDGLKRDQELQLQAKKISGILINWCKGTDHELDYREFIKAYEDHRH |
|