Gene
| Gene Model ID | pfu_aug1.0_1.1_00018 |
|---|---|
| Locus | scaffold1.1 : 288916 ... 292819 : + |
| To GenomeBrowser | scaffold1.1:288916..292819 |
| Genes list of scaffold | scaffold1.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1.1_00018.t1 | 1 | 1 | VWA_2 | 1 | 154 | 1.6e-17 | 64.1 | 4.4e-21 | 1.6e-17 | 64.1 |
| pfu_aug1.0_1.1_00018.t1 | 1 | 1 | VWA | 2 | 174 | 1.49939e-42 | 145.2 | 0.0 | 1.80067e-42 | 145.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1.1_00018.t1 | gi|334324030|ref|XP_001373784.2| | PREDICTED: collagen alpha-1(XII) chain isoform X1 [Monodelphis domestica] | 1.0e-27 |
Transcript
| Transcript ID | pfu_aug1.0_1.1_00018.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1.1_00018.t1 atggtctttattctggactcctccactagcgtcggacaggacaactttgaaaaaatgctcaaattctgtaaagacttctt acattccgctaacatagattccggtgacgtgagggttggtatcgtatcttacagttctgaagtcactgtggaattccaaa tgaacacctataccactcaaaaggctctttttgaagccatagataacataccctggcggtacggtagtactaatactgcc gatggcctcctaacgatgcattccgaaatgtttactgcagcaaacggtgacagaataggtgttccgaatattgccatcat tgtgacagacggtgtttcaaacataaattcacgaaggaccattccggaagctgaggatgcgcgctcaaagggaattcatg tttatgctattggcatcggtttgacagacacgagggaggtaaacggaatagcatctgatcccgctacagagaatgccttc tttgtacaatcgttcgatgaattggaaggtttagacgaaaaaatatttgaagctacatgtggtaaatattaa |
|
Protein
| Protein ID | pfu_aug1.0_1.1_00018.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1.1_00018.t1 MVFILDSSTSVGQDNFEKMLKFCKDFLHSANIDSGDVRVGIVSYSSEVTVEFQMNTYTTQKALFEAIDNIPWRYGSTNTA DGLLTMHSEMFTAANGDRIGVPNIAIIVTDGVSNINSRRTIPEAEDARSKGIHVYAIGIGLTDTREVNGIASDPATENAF FVQSFDELEGLDEKIFEATCGKY |
|