Gene
| Gene Model ID | pfu_aug1.0_10.1_21911 |
|---|---|
| Locus | scaffold10.1 : 154917 ... 161115 : - |
| To GenomeBrowser | scaffold10.1:154917..161115 |
| Genes list of scaffold | scaffold10.1 |
| Synonym | pfu_aug2.0_5317.1_26058 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_10.1_21911.t1 | 2 | 1 | Transglut_core | 115 | 189 | 9.8e-14 | 51.5 | 6.4e-17 | 1.9e-13 | 50.6 |
| pfu_aug1.0_10.1_21911.t1 | 1 | 1 | Rad4 | 171 | 250 | 1.1e-11 | 44.3 | 9.2e-15 | 2.7e-11 | 43.0 |
| pfu_aug1.0_10.1_21911.t1 | 2 | 2 | Transglut_core | 357 | 379 | 9.8e-14 | 51.5 | 0.68 | 2000.0 | -1.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_10.1_21911.t1 | gi|260819935|ref|XP_002605291.1| | hypothetical protein BRAFLDRAFT_95865 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_10.1_21911.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10.1_21911.t1 atggagcaacgtttctttcaaaagatacaatcaaatttagttcacgtcttgatgtatgaagatccaagtatccagctgaa ggcacgttcaatcattccagtagaagccttgaagaaagcagctcatgaaaaactagaggcaataataaaggaagacaact cttcagctcgcagtattgattttagggacttaatgttgttagagttactggcatggtttaagaattcctttttcaaatgg atggattcaccaaagtgccctcaatgcaatggaaacactaggagtgtgggtatggcacaaccgacacaggaagaactaaa gtggcagggaggaagggtagagaattataaatgtgatagatgtcaaatttttgttcgttttcctcgctacaaccatccag aaaagttgttagaaaccagatgtggtagatgtggagaatgggctaactgctttactttatgctgtagagctctgggattt gaagcacgttatgtccttgattggactgaccatgtgtggacggaggtttactcagtggtccaaaagcgctggctccattg tgatccctgtgaaaatacctgtgataagcctttactttatgaggcagggtggggcaaaaaactgtcgtatgtactagctt tctctaaagatgaggtgcaggatgtcacttggcgctactcaaacaagcatgctgaggttttgagtcgcaggaatgagtgt agagaaacctggcttgtcattataatacacaggctgtggaaggccaaggaaactatcaacagcccagataggaacaaaga aatgaaggacagacttttgacagaactggtggaatttatgtctccaaagtcagctgacggacaaaacctctctggtagga catcagggtcactagcctggagactagccaggggggaaacaagccaggcctcgacaggggcggtagaaagttacgtcttt aagctggctgacgaggagaagaaatcaaagcttttccatctcaagtacagctgtgctaaggatgagtacactagagtttc agcagggaaggcgacagagaaaaagtttataaaatatttacataaagtacaaaatgtattcaggaaggaggagcatgact ggaagatggtttacttagctagaacagagggatcccctacagctgccgtatcatggaagtttgacttcacaggtatgaca gttgatagagtagaagtaagagccagtagctgtacgtatgagaatggtgtaatatcgtggagactgtgtagcaaagataa atgtgttatgctaaatggaggagatgaccttaagtcatacgacgaccttgaatgggcagaggatatgaccttgacagcta tgctaagtggtggtaaaggtgatgttgcttggcaacacactcagctcttcaggcagaaaatggacgacacagaaagttgt cctttagaaatcaaagtatattttaaataa |
|
Protein
| Protein ID | pfu_aug1.0_10.1_21911.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10.1_21911.t1 MEQRFFQKIQSNLVHVLMYEDPSIQLKARSIIPVEALKKAAHEKLEAIIKEDNSSARSIDFRDLMLLELLAWFKNSFFKW MDSPKCPQCNGNTRSVGMAQPTQEELKWQGGRVENYKCDRCQIFVRFPRYNHPEKLLETRCGRCGEWANCFTLCCRALGF EARYVLDWTDHVWTEVYSVVQKRWLHCDPCENTCDKPLLYEAGWGKKLSYVLAFSKDEVQDVTWRYSNKHAEVLSRRNEC RETWLVIIIHRLWKAKETINSPDRNKEMKDRLLTELVEFMSPKSADGQNLSGRTSGSLAWRLARGETSQASTGAVESYVF KLADEEKKSKLFHLKYSCAKDEYTRVSAGKATEKKFIKYLHKVQNVFRKEEHDWKMVYLARTEGSPTAAVSWKFDFTGMT VDRVEVRASSCTYENGVISWRLCSKDKCVMLNGGDDLKSYDDLEWAEDMTLTAMLSGGKGDVAWQHTQLFRQKMDDTESC PLEIKVYFK |
|