Gene
Gene Model ID | pfu_aug1.0_10002.1_10047 |
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Locus | scaffold10002.1 : 35746 ... 38673 : + |
To GenomeBrowser | scaffold10002.1:35746..38673 |
Genes list of scaffold | scaffold10002.1 |
Synonym | pfu_aug2.0_1398.1_28264 |
Manual annotation
Study field | Metabolism |
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Gene name | RPE65 superfamily |
Description | Highest blast hit to NP_820017.1lignostilbene-alpha,beta-dioxygenase [Coxiella burnetii RSA 493] |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_10002.1_10047.t1 | 1 | 1 | RPE65 | 38 | 306 | 0.0 | 169.5 | 0.0 | 0.0 | 169.2 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_10002.1_10047.t1 | gi|260831844|ref|XP_002610868.1| | hypothetical protein BRAFLDRAFT_94884 [Branchiostoma floridae] | 8.96831e-44 |
Transcript
Transcript ID | pfu_aug1.0_10002.1_10047.t1 |
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Definition | - |
>pfu_aug1.0_10002.1_10047.t1 atgctgagggaattcgggactaaagaatctcacataggaatcgtgacaaaaattagtattgtacctatccttcctcatca gatattgattgcacgagtccataacgttaaaatatatgagaaaattgcagaaattgaggtaaacaatgctccttacttac caacattctcagtgactgaaaattatgtaatcgtttatgtaccgccattttacatagacgttgctaaatatgaagtctcc ctcattcttaaagatagcctggaatttagaaatagcgaaccttcctttatctatgtcattgaaattagtaccggaaaggt aacaacacttaaaagcagtccaggattcgtgctacatcacataaacgctcaagaagtaaacgataatcaaataaatatgg atgtctgtttatataatgatgcaaagattttggataactatgatttaagtgttctcgtgaataagacaatgcgagatagt ctgcaatggcgaccaaaagttatccggatgcaattggatttaaccgagagttctgtgcgaagtgttacatttaacaactc tgaaaaggtggcatattcagcagaacttgaatttccttccattaacgaaagatatagatcaaaacactattgtttcgttt atggaatagtgtttgcaaaaaatgacacagtattttcccagtggaaagtcgtcaagaaaaatctatgtagcgatactggt gatttagagtttaatgttcctagcatatatccagcggaagtgacgtttgttagcgatccaaccggaagtaaagaagatga tggttacttattaatggtggccttcaatactgtgacaaattcaagtgaccttgtcattattgacgccagaactatgctca taaataacactgctgtgttgcctacttttgtaccattcacgtatagtggaggtttatttcagttccccaaatcatga |
Protein
Protein ID | pfu_aug1.0_10002.1_10047.t1 |
---|---|
Definition | - |
>pfu_aug1.0_10002.1_10047.t1 MLREFGTKESHIGIVTKISIVPILPHQILIARVHNVKIYEKIAEIEVNNAPYLPTFSVTENYVIVYVPPFYIDVAKYEVS LILKDSLEFRNSEPSFIYVIEISTGKVTTLKSSPGFVLHHINAQEVNDNQINMDVCLYNDAKILDNYDLSVLVNKTMRDS LQWRPKVIRMQLDLTESSVRSVTFNNSEKVAYSAELEFPSINERYRSKHYCFVYGIVFAKNDTVFSQWKVVKKNLCSDTG DLEFNVPSIYPAEVTFVSDPTGSKEDDGYLLMVAFNTVTNSSDLVIIDARTMLINNTAVLPTFVPFTYSGGLFQFPKS |