Gene
| Gene Model ID | pfu_aug1.0_10002.1_10047 |
|---|---|
| Locus | scaffold10002.1 : 35746 ... 38673 : + |
| To GenomeBrowser | scaffold10002.1:35746..38673 |
| Genes list of scaffold | scaffold10002.1 |
| Synonym | pfu_aug2.0_1398.1_28264 |
Manual annotation
| Study field | Metabolism |
|---|---|
| Gene name | RPE65 superfamily |
| Description | Highest blast hit to NP_820017.1lignostilbene-alpha,beta-dioxygenase [Coxiella burnetii RSA 493] |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_10002.1_10047.t1 | 1 | 1 | RPE65 | 38 | 306 | 0.0 | 169.5 | 0.0 | 0.0 | 169.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_10002.1_10047.t1 | gi|260831844|ref|XP_002610868.1| | hypothetical protein BRAFLDRAFT_94884 [Branchiostoma floridae] | 8.96831e-44 |
Transcript
| Transcript ID | pfu_aug1.0_10002.1_10047.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10002.1_10047.t1 atgctgagggaattcgggactaaagaatctcacataggaatcgtgacaaaaattagtattgtacctatccttcctcatca gatattgattgcacgagtccataacgttaaaatatatgagaaaattgcagaaattgaggtaaacaatgctccttacttac caacattctcagtgactgaaaattatgtaatcgtttatgtaccgccattttacatagacgttgctaaatatgaagtctcc ctcattcttaaagatagcctggaatttagaaatagcgaaccttcctttatctatgtcattgaaattagtaccggaaaggt aacaacacttaaaagcagtccaggattcgtgctacatcacataaacgctcaagaagtaaacgataatcaaataaatatgg atgtctgtttatataatgatgcaaagattttggataactatgatttaagtgttctcgtgaataagacaatgcgagatagt ctgcaatggcgaccaaaagttatccggatgcaattggatttaaccgagagttctgtgcgaagtgttacatttaacaactc tgaaaaggtggcatattcagcagaacttgaatttccttccattaacgaaagatatagatcaaaacactattgtttcgttt atggaatagtgtttgcaaaaaatgacacagtattttcccagtggaaagtcgtcaagaaaaatctatgtagcgatactggt gatttagagtttaatgttcctagcatatatccagcggaagtgacgtttgttagcgatccaaccggaagtaaagaagatga tggttacttattaatggtggccttcaatactgtgacaaattcaagtgaccttgtcattattgacgccagaactatgctca taaataacactgctgtgttgcctacttttgtaccattcacgtatagtggaggtttatttcagttccccaaatcatga |
|
Protein
| Protein ID | pfu_aug1.0_10002.1_10047.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10002.1_10047.t1 MLREFGTKESHIGIVTKISIVPILPHQILIARVHNVKIYEKIAEIEVNNAPYLPTFSVTENYVIVYVPPFYIDVAKYEVS LILKDSLEFRNSEPSFIYVIEISTGKVTTLKSSPGFVLHHINAQEVNDNQINMDVCLYNDAKILDNYDLSVLVNKTMRDS LQWRPKVIRMQLDLTESSVRSVTFNNSEKVAYSAELEFPSINERYRSKHYCFVYGIVFAKNDTVFSQWKVVKKNLCSDTG DLEFNVPSIYPAEVTFVSDPTGSKEDDGYLLMVAFNTVTNSSDLVIIDARTMLINNTAVLPTFVPFTYSGGLFQFPKS |
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