Gene
| Gene Model ID | pfu_aug1.0_10086.1_31876 |
|---|---|
| Locus | scaffold10086.1 : 16371 ... 29585 : - |
| To GenomeBrowser | scaffold10086.1:16371..29585 |
| Genes list of scaffold | scaffold10086.1 |
| Synonym | pfu_aug2.0_1061.1_04798 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_10086.1_31876.t1 | 1 | 1 | Molybdopterin | 98 | 425 | 0.0 | 236.3 | 0.0 | 0.0 | 233.2 |
| pfu_aug1.0_10086.1_31876.t1 | 1 | 1 | DUF1982 | 455 | 507 | 2.3e-14 | 53.2 | 1.8e-17 | 6.8e-14 | 51.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_10086.1_31876.t1 | gi|149046009|gb|EDL98902.1| | NADH dehydrogenase (ubiquinone) Fe-S protein 1, isoform CRA_b [Rattus norvegicus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| mantleEdge | 2 |
| mantlePallium | 2 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_10086.1_31876.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10086.1_31876.t1 atgcaggtggggacatatgtagagaagctgttccgatcggagttatctggaaatgttattgatctctgcccagtgggagc gctcacatcaaagccttatgcatttacagccagaccttgggaaacaaggaaaacagagagtatagatgtgatggatgccc tgggcagcaatattgttgtcagcacacgtactaatgaagtgatgagaatattacccaggatgaacgaggatattaatgaa gaatggatatcagataagaccagatttgcctatgacggtttgaagaggcagaggttggcgttcccttacattaaggatgc ttcagggacgttacaacaaacatcatgggaaaaagcattgatgactgcggcagaaaagatcagttcagtggagggaagtc aaattgccggtcttgccgggggactggtagatgcggaggctctgatatcgctaaaagatctactgaacaaactgggatct gaatctctgtgcaccgaagaaatattccctatggacggagcaggaactgacttgaggtcaaactaccttcttaacaccaa aatagccggtatcgaggaggctgaccttgttctatttataggaactaaccctaggttcgaggcacctctcttgaatgcca gagttagaaagagttggattcataatgagcttgatgtagcattaattggtacccctgttgaccttacctatgactacgag catgtgggagagtcgactgatgttataaaacagattgcccagggaaatcacccttttacaaagagactgaacagtgcgaa gaagccaatggtagttgttggtagttctgctttacagaggaaggacggtggtgccatcttggccgcagtgtctacgatcg ccaacactgctcgcgtcaactcaggttgtggtgacagctggaaagttctcaatgtccttcatagggtagccagtcaggta gcagccttggacctagggtataaggcaggagtagatgtgatcaggcagaaccctcctaaagtcctgttcctattgggagc cgatgctggggttataacaaggcaagacctacctaaggactgctttgtcatttatcaaggtcaccatggtgatgaaggag ttaatatggctgatcttgtcttacctggagtagcgtacactgagaagaatgctacctatgttaacactgagggtagagct caacagacccgcctggctgtgtcgccacctggtcaggcaaaggaggactggaaaatcatcagagccttatctgagatcgc tggcaagaagcttccatatgataacatagcggaggtcagacatcgtttatcacaggtgtcacctaacctcaccagatacg gcgacgctgaagacgctaattacttcaaacaggcacaacagctggcagggttggtgaaagggcagatggaacctacccct atgacgcctccaatgctcgaacttaaagacttttatatgaccgattcaatcagtcgtgcttctcaaacaatggccaagtg tgtgcaggcagtacaggaatcagagaaaaatccgtatctggaagattag |
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Protein
| Protein ID | pfu_aug1.0_10086.1_31876.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10086.1_31876.t1 MQVGTYVEKLFRSELSGNVIDLCPVGALTSKPYAFTARPWETRKTESIDVMDALGSNIVVSTRTNEVMRILPRMNEDINE EWISDKTRFAYDGLKRQRLAFPYIKDASGTLQQTSWEKALMTAAEKISSVEGSQIAGLAGGLVDAEALISLKDLLNKLGS ESLCTEEIFPMDGAGTDLRSNYLLNTKIAGIEEADLVLFIGTNPRFEAPLLNARVRKSWIHNELDVALIGTPVDLTYDYE HVGESTDVIKQIAQGNHPFTKRLNSAKKPMVVVGSSALQRKDGGAILAAVSTIANTARVNSGCGDSWKVLNVLHRVASQV AALDLGYKAGVDVIRQNPPKVLFLLGADAGVITRQDLPKDCFVIYQGHHGDEGVNMADLVLPGVAYTEKNATYVNTEGRA QQTRLAVSPPGQAKEDWKIIRALSEIAGKKLPYDNIAEVRHRLSQVSPNLTRYGDAEDANYFKQAQQLAGLVKGQMEPTP MTPPMLELKDFYMTDSISRASQTMAKCVQAVQESEKNPYLED |
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