Gene
| Gene Model ID | pfu_aug1.0_1009.1_00582 |
|---|---|
| Locus | scaffold1009.1 : 49529 ... 62075 : - |
| To GenomeBrowser | scaffold1009.1:49529..62075 |
| Genes list of scaffold | scaffold1009.1 |
| Synonym | pfu_aug2.0_327.1_23863 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1009.1_00582.t1 | 8 | 1 | zf-H2C2_2 | 267 | 281 | 3.8e-21 | 74.2 | 0.00056 | 0.75 | 10.1 |
| pfu_aug1.0_1009.1_00582.t1 | 7 | 1 | zf-C2H2 | 272 | 293 | 8.9e-25 | 85.4 | 0.00011 | 0.15 | 12.4 |
| pfu_aug1.0_1009.1_00582.t1 | 7 | 1 | zf-C2H2_4 | 272 | 293 | 2.8e-22 | 77.3 | 0.0013 | 1.7 | 9.1 |
| pfu_aug1.0_1009.1_00582.t1 | 8 | 2 | zf-H2C2_2 | 288 | 310 | 3.8e-21 | 74.2 | 4.0e-05 | 0.054 | 13.8 |
| pfu_aug1.0_1009.1_00582.t1 | 7 | 2 | zf-C2H2 | 299 | 323 | 8.9e-25 | 85.4 | 8.3e-05 | 0.11 | 12.8 |
| pfu_aug1.0_1009.1_00582.t1 | 7 | 2 | zf-C2H2_4 | 299 | 323 | 2.8e-22 | 77.3 | 0.0017 | 2.3 | 8.7 |
| pfu_aug1.0_1009.1_00582.t1 | 8 | 3 | zf-H2C2_2 | 316 | 339 | 3.8e-21 | 74.2 | 5.0e-07 | 0.00067 | 19.8 |
| pfu_aug1.0_1009.1_00582.t1 | 7 | 3 | zf-C2H2 | 329 | 351 | 8.9e-25 | 85.4 | 1.6e-09 | 2.2e-06 | 27.6 |
| pfu_aug1.0_1009.1_00582.t1 | 7 | 3 | zf-C2H2_4 | 329 | 351 | 2.8e-22 | 77.3 | 3.0e-09 | 4.0e-06 | 26.7 |
| pfu_aug1.0_1009.1_00582.t1 | 8 | 4 | zf-H2C2_2 | 343 | 369 | 3.8e-21 | 74.2 | 4.7e-06 | 0.0063 | 16.7 |
| pfu_aug1.0_1009.1_00582.t1 | 7 | 4 | zf-C2H2 | 358 | 380 | 8.9e-25 | 85.4 | 0.00012 | 0.17 | 12.3 |
| pfu_aug1.0_1009.1_00582.t1 | 7 | 4 | zf-C2H2_4 | 358 | 380 | 2.8e-22 | 77.3 | 0.0042 | 5.6 | 7.5 |
| pfu_aug1.0_1009.1_00582.t1 | 8 | 5 | zf-H2C2_2 | 373 | 396 | 3.8e-21 | 74.2 | 0.16 | 210.0 | 2.4 |
| pfu_aug1.0_1009.1_00582.t1 | 7 | 5 | zf-C2H2 | 389 | 410 | 8.9e-25 | 85.4 | 0.0015 | 2.1 | 8.8 |
| pfu_aug1.0_1009.1_00582.t1 | 7 | 5 | zf-C2H2_4 | 389 | 410 | 2.8e-22 | 77.3 | 7.5e-05 | 0.1 | 12.9 |
| pfu_aug1.0_1009.1_00582.t1 | 8 | 6 | zf-H2C2_2 | 403 | 435 | 3.8e-21 | 74.2 | 4.0e-06 | 0.0054 | 16.9 |
| pfu_aug1.0_1009.1_00582.t1 | 7 | 6 | zf-C2H2 | 424 | 446 | 8.9e-25 | 85.4 | 6.1e-07 | 0.00083 | 19.5 |
| pfu_aug1.0_1009.1_00582.t1 | 7 | 6 | zf-C2H2_4 | 424 | 446 | 2.8e-22 | 77.3 | 5.8e-07 | 0.00078 | 19.6 |
| pfu_aug1.0_1009.1_00582.t1 | 8 | 7 | zf-H2C2_2 | 439 | 462 | 3.8e-21 | 74.2 | 3.3e-08 | 4.5e-05 | 23.5 |
| pfu_aug1.0_1009.1_00582.t1 | 7 | 7 | zf-C2H2_4 | 452 | 475 | 2.8e-22 | 77.3 | 9.9e-07 | 0.0013 | 18.8 |
| pfu_aug1.0_1009.1_00582.t1 | 7 | 7 | zf-C2H2 | 454 | 475 | 8.9e-25 | 85.4 | 6.0e-07 | 0.00081 | 19.6 |
| pfu_aug1.0_1009.1_00582.t1 | 8 | 8 | zf-H2C2_2 | 466 | 479 | 3.8e-21 | 74.2 | 0.035 | 47.0 | 4.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1009.1_00582.t1 | gi|260784111|ref|XP_002587112.1| | hypothetical protein BRAFLDRAFT_156770 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_1009.1_00582.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1009.1_00582.t1 atggatcaacacaatgtggagcaccaagatattgtacagcaggcactgggtatcgtcaaggtaacagaacaacaaataat ggccgatgagatccagcagcagggtctgtccggtccctatggtgatgtgtcaaccacaatcccccactcattacctgcca atagtatgacagacacagtcagtctggtcactactttggccagtggagacatgacagctgcaggtcagtatgctgccaca ctggacacagaacaacaacaacagctgattgtagcaggattaatgacacagagtcatctccccctgcatagtagctacgc ccctgtatatacacaaccgataaccatcacagacaataccaagcaaattaatggtcaagtgacagaggaaacaggcagta tggtagagaaaaataatgggaaaagcctgaagaaagaaatggtagatccagctgatcaagaatttgaactgaagattttc catgaggatgggtatgaggactgtctagatttgtctgatgaggagtcgtgtaactggatgatgttgcctataccttccaa tactgagataagagtatggtactcgccagattatgctaagcagatagggaaggaacttttacttgagaaaaaggaagaaa aaccagtcattcgtgttaaaaatgatgaggatgtgacactagctatgttagaggatgtagatgatgttctagatgatgac gattttccgtatcccaaaccaaaacgaagaggaagaaaacgtcgccctccaggtgccccaaaaattcccagaatacccaa gaaggatccacttccttgtccccactgtggagagaaattcacgaaagaagccctctttgtgatccatgttgctgagcata caggcattaaacctttcatttgtgaggtggaggaatgtggtaaaggatttatgtccaagtttaagcttgaacgtcatagg ttgattcacacatgtcctcgaggtcataagtgtccttactgtgacaagagctttaataggaaagatcacctcaaaaacca catgattacccatgatccaaataaaaaacgatgggtatgtgaagagtgcggcaaggagtactcgtataacttctcttata gaactcataaagcatttcatgatgcagatgctggtcggacgctagagtgcggtatttgcagaaaggttcataatactaga gaagaactcttgtatcatttaaaagttcacagtggtgctagatctgttaaaaactgtacagaaaaaactcatgcttgtga tgattgtggcaaaaaattttacacgcgcaaggatgttagacgtcatatgatcactcacacaaagaaaaaggactttctat gtcaatattgtcctcaaaggtttgggaggaaagatcatctcacaaggcatttacgatcttcccactctggggacaattct aatcagaagatacgtacaccaaaaggagagagaaaagtacgaccagagccagcatctatgattgggcttaccatcccaaa tactgaccaaaatctcctgggatcaacacagcaatctctcaactaccaactacatgcactgccacaggaattccgtgacg tgccagtacctgtgccaatacacatgtttgataaccagaaccaacagctgataacactggctggtgctacagtgacccag aatcctattattcaagctggacaacaacagcaacaacaagcccagcaacaacaacaccaggtgctacaagccattccaca acagctggccaatcagattcaggttattgataaccgttacatcatagatagttcagctgccgtacgtcaacaacaacaac aacaacaacacatagacaacacaaatcctaatgaatatagggccttacaagccgtctcacaatctcatgtgccaacaatg tatatgcaagtaggccagcaacaacaacagcagcaacctcagcaacaacaacaacaacaacagatagctgttgccaacag ggaagtgaacatagacttaacacgtaatggtgctgtacaagattatcaggctgttgtacctcggtctgatcagcaaaatc cacgacccacagtggtacaagctgctgataataataacagacagaacacccaacaggcacagacattctccacattgatt ggttatatggagacactacgttttctagagacccttccaacccctagtgcccccaacagtgtgctggcccagatgacgat gcagcagacagacggacagcaggctacagctaccatgataccaatacagccgtccctggcgtacactacagctacaagta tcactgcacaacaactccctgtntatctggatcatagcagagagtgtattgcacctatcatcatggaatttgctggacat gttcctataagtcagggttgtgctctattgattttgagatcaaagttcaaggttacaagactttatcaagtttatgactg a |
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Protein
| Protein ID | pfu_aug1.0_1009.1_00582.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1009.1_00582.t1 MDQHNVEHQDIVQQALGIVKVTEQQIMADEIQQQGLSGPYGDVSTTIPHSLPANSMTDTVSLVTTLASGDMTAAGQYAAT LDTEQQQQLIVAGLMTQSHLPLHSSYAPVYTQPITITDNTKQINGQVTEETGSMVEKNNGKSLKKEMVDPADQEFELKIF HEDGYEDCLDLSDEESCNWMMLPIPSNTEIRVWYSPDYAKQIGKELLLEKKEEKPVIRVKNDEDVTLAMLEDVDDVLDDD DFPYPKPKRRGRKRRPPGAPKIPRIPKKDPLPCPHCGEKFTKEALFVIHVAEHTGIKPFICEVEECGKGFMSKFKLERHR LIHTCPRGHKCPYCDKSFNRKDHLKNHMITHDPNKKRWVCEECGKEYSYNFSYRTHKAFHDADAGRTLECGICRKVHNTR EELLYHLKVHSGARSVKNCTEKTHACDDCGKKFYTRKDVRRHMITHTKKKDFLCQYCPQRFGRKDHLTRHLRSSHSGDNS NQKIRTPKGERKVRPEPASMIGLTIPNTDQNLLGSTQQSLNYQLHALPQEFRDVPVPVPIHMFDNQNQQLITLAGATVTQ NPIIQAGQQQQQQAQQQQHQVLQAIPQQLANQIQVIDNRYIIDSSAAVRQQQQQQQHIDNTNPNEYRALQAVSQSHVPTM YMQVGQQQQQQQPQQQQQQQQIAVANREVNIDLTRNGAVQDYQAVVPRSDQQNPRPTVVQAADNNNRQNTQQAQTFSTLI GYMETLRFLETLPTPSAPNSVLAQMTMQQTDGQQATATMIPIQPSLAYTTATSITAQQLPXYLDHSRECIAPIIMEFAGH VPISQGCALLILRSKFKVTRLYQVYD |
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