Gene
| Gene Model ID | pfu_aug1.0_1019.1_36785 |
|---|---|
| Locus | scaffold1019.1 : 1 ... 3855 : - |
| To GenomeBrowser | scaffold1019.1:1..3855 |
| Genes list of scaffold | scaffold1019.1 |
| Synonym | pfu_aug2.0_184.1_13755 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1019.1_36785.t1 | 3 | 1 | Cadherin_2 | 26 | 111 | 1.4e-13 | 50.2 | 1.2e-13 | 2.0e-10 | 40.0 |
| pfu_aug1.0_1019.1_36785.t1 | 7 | 1 | Cadherin | 58 | 106 | 0.0 | 329.4 | 1.8e-06 | 0.0029 | 17.8 |
| pfu_aug1.0_1019.1_36785.t1 | 7 | 2 | Cadherin | 144 | 238 | 0.0 | 329.4 | 1.4e-11 | 2.4e-08 | 34.1 |
| pfu_aug1.0_1019.1_36785.t1 | 3 | 1 | Cadherin_pro | 246 | 329 | 4.4e-06 | 26.3 | 0.1 | 170.0 | 2.0 |
| pfu_aug1.0_1019.1_36785.t1 | 7 | 3 | Cadherin | 252 | 345 | 0.0 | 329.4 | 1.5e-15 | 2.4e-12 | 46.9 |
| pfu_aug1.0_1019.1_36785.t1 | 7 | 4 | Cadherin | 365 | 456 | 0.0 | 329.4 | 1.7e-17 | 2.8e-14 | 53.1 |
| pfu_aug1.0_1019.1_36785.t1 | 3 | 2 | Cadherin_pro | 462 | 548 | 4.4e-06 | 26.3 | 0.0031 | 5.1 | 6.9 |
| pfu_aug1.0_1019.1_36785.t1 | 7 | 5 | Cadherin | 470 | 560 | 0.0 | 329.4 | 8.3e-22 | 1.4e-18 | 66.9 |
| pfu_aug1.0_1019.1_36785.t1 | 3 | 2 | Cadherin_2 | 508 | 532 | 1.4e-13 | 50.2 | 0.037 | 61.0 | 3.2 |
| pfu_aug1.0_1019.1_36785.t1 | 3 | 3 | Cadherin_pro | 569 | 649 | 4.4e-06 | 26.3 | 4.2e-05 | 0.07 | 12.9 |
| pfu_aug1.0_1019.1_36785.t1 | 7 | 6 | Cadherin | 574 | 663 | 0.0 | 329.4 | 1.5e-20 | 2.5e-17 | 62.8 |
| pfu_aug1.0_1019.1_36785.t1 | 3 | 3 | Cadherin_2 | 574 | 594 | 1.4e-13 | 50.2 | 0.077 | 130.0 | 2.2 |
| pfu_aug1.0_1019.1_36785.t1 | 7 | 7 | Cadherin | 692 | 771 | 0.0 | 329.4 | 1.4e-15 | 2.3e-12 | 46.9 |
Transcript
| Transcript ID | pfu_aug1.0_1019.1_36785.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1019.1_36785.t1 atgttgaccatgtggcttgccggtctattgtttatcaacgcttttctctccatctttctcgctgtttctgggaacaccat ccagtatcaagtgacagaggaaacaggagctaatttcttcatcggcagtatcttacaagatgcaaatattgcttcgcggg tgaacgacaccaaaaacttagaattcagtcttctatcgtcaggaaatggagctgcgtcgaacttcttcgtcgatgcaaaa aatggcagcattttcaccaacaaatctctggacagggatacgatatgtcagtatgaggacatatgtgtgctcagtgtagg agttgttgctaaatcccccgggaacgaattcttcgaaataattaaaatagaggtagaaatcctggatataaacgatcatg caccagttttccaacattcgacagctcagctacagatttccgaaaacgtagctataaacacaaccttttccttggacggc gcggtagatcttgattcggaagaattttccgtgaggagatacgaaattgcgaacgctgatgttcctttccgagcggaagc tgactcatatccggatggcaggtcaatgctgcgtttgattgttacagaaccacttgatcgggaacggcaaagcttttttc agattcagatttctgccatcgatggcggagaccctcctttttccggatatctgttcttggagatcgaaataaccgacgtt aacgacaactacccgacattttccaaaccatcttacaatgttaccgttgacgacagcagtgactttgacacaattgttac caaggtaacggcgtatgatgaagattcagatgagaatggccaagtcgagtacaggtttgcgaaactacagtcctctgata tttttgaacattttgccattaacatttcccatggtgtgatttctgtgaagaagagcttccatacaactcaaaaggaatca tttaccattaaagtagaagcgacagatcaggggaagcaaccgcttgtttcgcaatgctttgtttatgtgaagatcagaga cacatacaacgattatcctgtgataaacgtgaacattctttcggacggaactgtagcggaagtttctgagcatgccagtt acggttccgttattgcgcatgtcgccgtaagtgacccggatactggagctaacggcttagtcacgtgcacaatttcggcg ggtaattttggtattcaaagattcgatgatgatgaaaatgaatataaaattaccgtcgctgcgtcattgaatcgagaggt aatggattcgtatgacgtcacgataaaatgttccgatgcaggtagtccgcctagaatttcaaatgcgacatttgaagtga aagttttggatgaaaacgaccacacgccaactttttatcagaaaatctacgaagtttctgtcaaagaaaataaccgcaaa ggaatacatattctcgacgttttagctgtagactatgatatcagcttaaacagtgccataacgtactcaatcgcttctat catggaagatagaattaccataaataaggacaacggctccatctacgtcaatatggctctcgataaggaaacgttggata aattttcattctacgtttttgcctctgatgaagggacgccacccctgacaggaacggcaactgttacagtacttgtagag gacgaaaatgataacgcacccaaattttctgatccaaattttactttcagcgttaaagaaaatatgccgccgcaaacata cgttgggacattgagagccgacgatgcagattcggatagaaatggcaaaatcttttatcgcctgcccttcggctcagaaa aaggaccggttaaagtctcggagaatggtagcatatacacggatcagagttttgatagagaagttcaacaaatgtacaga tttttcgtcgaggcgtctgataaaggagttccgacgaggacaaccagagctgaaattctgttagaggttcttgacgagaa tgacaacgaaccggtgtttgtgttcccgaatggtagtaacaataccgtcatcttaacgtacggtggatcaaaaagtacga aagtggctacgttacaggcactagatgctgatgtcggcactaatgcaaggctggcttacttttcaaatgatcgaaattac tctgatatatttgctataaatagtggcaacggcgagcttgttctgatcagaaatcttggcgctacagacatggggtctta caagcttgatgttctagtcaaggacagtggacagccgccattatacaaccaaggaacacttatggttgtcgtaaaatcac cgatggaaccggaagtacagaaatactctaaatattatgtcatcgccatcaccatggcaatagtgacggtgacaattgca cttttgatacttttgatcatctttttcatcagacgacgtgaaaggcaagcgttgaacgagtctaacgctagacaacagtt tattgacaaaataaaggagggagaagaggcagggttttccccggaagatagcctgagtatatctaaggacgtgtactacc cacctggttatgagtttggtacaaccacgagacagttccatacgttagagagagcaaagtcatatcaggtatatgttatt acaacgtactgtctttatatatacaaaaatcatttacgtcttcagaaaatttaa |
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Protein
| Protein ID | pfu_aug1.0_1019.1_36785.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1019.1_36785.t1 MLTMWLAGLLFINAFLSIFLAVSGNTIQYQVTEETGANFFIGSILQDANIASRVNDTKNLEFSLLSSGNGAASNFFVDAK NGSIFTNKSLDRDTICQYEDICVLSVGVVAKSPGNEFFEIIKIEVEILDINDHAPVFQHSTAQLQISENVAINTTFSLDG AVDLDSEEFSVRRYEIANADVPFRAEADSYPDGRSMLRLIVTEPLDRERQSFFQIQISAIDGGDPPFSGYLFLEIEITDV NDNYPTFSKPSYNVTVDDSSDFDTIVTKVTAYDEDSDENGQVEYRFAKLQSSDIFEHFAINISHGVISVKKSFHTTQKES FTIKVEATDQGKQPLVSQCFVYVKIRDTYNDYPVINVNILSDGTVAEVSEHASYGSVIAHVAVSDPDTGANGLVTCTISA GNFGIQRFDDDENEYKITVAASLNREVMDSYDVTIKCSDAGSPPRISNATFEVKVLDENDHTPTFYQKIYEVSVKENNRK GIHILDVLAVDYDISLNSAITYSIASIMEDRITINKDNGSIYVNMALDKETLDKFSFYVFASDEGTPPLTGTATVTVLVE DENDNAPKFSDPNFTFSVKENMPPQTYVGTLRADDADSDRNGKIFYRLPFGSEKGPVKVSENGSIYTDQSFDREVQQMYR FFVEASDKGVPTRTTRAEILLEVLDENDNEPVFVFPNGSNNTVILTYGGSKSTKVATLQALDADVGTNARLAYFSNDRNY SDIFAINSGNGELVLIRNLGATDMGSYKLDVLVKDSGQPPLYNQGTLMVVVKSPMEPEVQKYSKYYVIAITMAIVTVTIA LLILLIIFFIRRRERQALNESNARQQFIDKIKEGEEAGFSPEDSLSISKDVYYPPGYEFGTTTRQFHTLERAKSYQVYVI TTYCLYIYKNHLRLQKI |
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