Gene
| Gene Model ID | pfu_aug1.0_10199.1_53496 |
|---|---|
| Locus | scaffold10199.1 : 21 ... 13640 : + |
| To GenomeBrowser | scaffold10199.1:21..13640 |
| Genes list of scaffold | scaffold10199.1 |
| Synonym | pfu_aug2.0_23.1_10121 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_10199.1_53496.t1 | 3 | 1 | Transferrin | 2 | 305 | 0.0 | 370.4 | 0.0 | 0.0 | 195.6 |
| pfu_aug1.0_10199.1_53496.t1 | 2 | 1 | Phosphonate-bd | 4 | 192 | 7.2e-14 | 51.7 | 1.1e-08 | 8.2e-05 | 22.0 |
| pfu_aug1.0_10199.1_53496.t1 | 3 | 2 | Transferrin | 313 | 467 | 0.0 | 370.4 | 3.0e-37 | 2.2e-33 | 115.5 |
| pfu_aug1.0_10199.1_53496.t1 | 2 | 2 | Phosphonate-bd | 352 | 441 | 7.2e-14 | 51.7 | 3.9e-10 | 2.9e-06 | 26.8 |
| pfu_aug1.0_10199.1_53496.t1 | 3 | 3 | Transferrin | 477 | 568 | 0.0 | 370.4 | 3.1e-19 | 2.3e-15 | 56.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_10199.1_53496.t1 | gi|260799005|ref|XP_002594490.1| | hypothetical protein BRAFLDRAFT_124962 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-Dshape | 1 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_10199.1_53496.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10199.1_53496.t1 atgaagcacatccaggatgataatgctgatgtcatgtccctggacacaggacagggatattttgctggacgttattataa tatgatgcctttccttgctgaaaaatatattgctgagacaacacttattcctggactccattattattctgtcggagtaa agagaactaacaacatattcaatgtcaggacattaaaaggcaaaaacgcctgcttcccatctattggatcagcagcaggt tggagatatccaataggaactctgatggacgattcgttgtataatgtcatcaaagtctccgaatgcaatgctgtcgttaa aacagtgtcagacttctttgggaatctctgtctgcctggagctttaacatcattctacaatccatttggtaacaacccta catcaatctgtgtacaatgtgccggtatcggtgaacagaagtgctctaccgatgacccatacgctggttatgacggtgcc tttaagtgtatggcgtatgatgcaggagatatcgctttcctcagacacgatactgttgacattatgacagccaatggtgt cttccagaaaggggattatgaattagtctgtccaaacggccttaaccagcctgtcgatagttacctgaactgtaactttg gtgatattccatccaacatggtgatgacatcatcactgaagcccaagtccatggtggacacatacaaggttttcctgaag caggcggtgagatggtttggccccggagggccgtatgagagcagatttaagatgttcggaggcctggtgatgggatccga ccgggccaatttactcttcacagacagtactgtgtcactggttgatgtcggcaaaaaggacacttactacagctgggtcg attccaacttctacaaggtgatggacaacctgaatgcctgtccactactgacagccaaattgtgtgtcatatccaaacag gaaaaggcaaaatgtgaaacaatgatggctgcatttgatgccaaagatttacgaccaagcctggactgtatcaaaggctc gggagctgaggactgcatgaagaaaatctcccgaggcgatgctgacctgatggtccttgacccaggagatatatatctcg ggggaaggaaatatggcctacagccgatagccatggaggactacggagacatgcagggctcattcttcagcgtggccgta gccaggaaacgggactctacaatgacactcttcaatcttaaacagaagagagcttgtttaccaggtataggtagaggtga tggttggatcataccaatgaatatattcatagagacggaacagttcctgccacaacattgcaccttgttcgaaaacttag gtcagttatttacacggtcttgtattcccggagccatggactatgactacaaccctaaccagaagccgaactgtcatcta ggaagggtgccgtccaatgccgtagtcacagctcagtataagtctgagcaggacaagctgatatactggcagctcctgaa ctacggacagcagttcttctcctctgatattgaaggggatttccatttgttcgactccggtacgtggtacaacgatctaa ttttcacagacgatgcagtgcgtttgatgaaagttcctgaaaacagaacaaactatttgaactatttaggcaaagacttt gtgaatcaagtcgaggcacttcatcaatacacctgcgtcccaatcaagaaaaattccgcaaatgtgctttcgtcgtccgt ttttgtgctagctcttattttcatactcaggactgtattatga |
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Protein
| Protein ID | pfu_aug1.0_10199.1_53496.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10199.1_53496.t1 MKHIQDDNADVMSLDTGQGYFAGRYYNMMPFLAEKYIAETTLIPGLHYYSVGVKRTNNIFNVRTLKGKNACFPSIGSAAG WRYPIGTLMDDSLYNVIKVSECNAVVKTVSDFFGNLCLPGALTSFYNPFGNNPTSICVQCAGIGEQKCSTDDPYAGYDGA FKCMAYDAGDIAFLRHDTVDIMTANGVFQKGDYELVCPNGLNQPVDSYLNCNFGDIPSNMVMTSSLKPKSMVDTYKVFLK QAVRWFGPGGPYESRFKMFGGLVMGSDRANLLFTDSTVSLVDVGKKDTYYSWVDSNFYKVMDNLNACPLLTAKLCVISKQ EKAKCETMMAAFDAKDLRPSLDCIKGSGAEDCMKKISRGDADLMVLDPGDIYLGGRKYGLQPIAMEDYGDMQGSFFSVAV ARKRDSTMTLFNLKQKRACLPGIGRGDGWIIPMNIFIETEQFLPQHCTLFENLGQLFTRSCIPGAMDYDYNPNQKPNCHL GRVPSNAVVTAQYKSEQDKLIYWQLLNYGQQFFSSDIEGDFHLFDSGTWYNDLIFTDDAVRLMKVPENRTNYLNYLGKDF VNQVEALHQYTCVPIKKNSANVLSSSVFVLALIFILRTVL |
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