Gene
| Gene Model ID | pfu_aug1.0_102538.1_06302 |
|---|---|
| Locus | scaffold102538.1 : 10 ... 1440 : + |
| To GenomeBrowser | scaffold102538.1:10..1440 |
| Genes list of scaffold | scaffold102538.1 |
| Synonym | pfu_aug2.0_646.1_21013 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | bmp3-like |
| Description | NCBI BLASTP hit to ref|XP_001494823.2| |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_102538.1_06302.t1 | 1 | 1 | TGF_beta | 227 | 268 | 3.0e-14 | 53.1 | 5.7e-18 | 8.4e-14 | 51.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_102538.1_06302.t1 | gi|194206177|ref|XP_001494823.2| | PREDICTED: bone morphogenetic protein 3B [Equus caballus] | 8.0e-15 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_102538.1_06302.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_102538.1_06302.t1 atgagggccgaaagtttcggctggcagtggtatgacgtcaccaactcagtagtgagttgtctggcggcaaggcggaaaag acctcacttgtttgcgctggattttaaggcggagaaaacaaacggaaaatataaatctatcgcattaaagaagttcgtac gtcatcattccatgccatttttagttatttattcgaacgatactcaggaaaatcgctttgaccaattagattctttagcc gaaaaaatgttaagcgaaaattaccaacattctcaaagtgaaagtgaaagtggagagaaagaaattagctcaaatttgaa aaccaaagagcaaagacatgtaaatggggattcggaaaaagttgttatccgagaaaaacgatccatttttgacaatgaga taccggaaaccccgatggactatgggcttttcgaaaggagatacaatattccgcaaactcatccgggtattttacaaggc aggcgtcaaaagaagcccgtcattgcaaatcatcaacttataccgtatcccaaaaaatcgaatcgatcaagaaaaaggaa aaatcgaaacaaaaacagacgacggaaaaatcataggaagaacagacgaaagttaaagttccctaaagaatgggaagatt atcatcgcaatctagccaacgaagaaaacgccggaagtgtgtgtgggcgccggaagttggttgtgaacttcgcagacata ggctggggtgattggattatttccccgaagtcgtttgatgctcattattgcacgggaacctgtcctttcccacttactaa ggtgagaattctttatttctcaaacatatttatagttgctgatgtttaa |
|
Protein
| Protein ID | pfu_aug1.0_102538.1_06302.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_102538.1_06302.t1 MRAESFGWQWYDVTNSVVSCLAARRKRPHLFALDFKAEKTNGKYKSIALKKFVRHHSMPFLVIYSNDTQENRFDQLDSLA EKMLSENYQHSQSESESGEKEISSNLKTKEQRHVNGDSEKVVIREKRSIFDNEIPETPMDYGLFERRYNIPQTHPGILQG RRQKKPVIANHQLIPYPKKSNRSRKRKNRNKNRRRKNHRKNRRKLKFPKEWEDYHRNLANEENAGSVCGRRKLVVNFADI GWGDWIISPKSFDAHYCTGTCPFPLTKVRILYFSNIFIVADV |
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