Gene
Gene Model ID | pfu_aug1.0_102538.1_06302 |
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Locus | scaffold102538.1 : 10 ... 1440 : + |
To GenomeBrowser | scaffold102538.1:10..1440 |
Genes list of scaffold | scaffold102538.1 |
Synonym | pfu_aug2.0_646.1_21013 |
Manual annotation
Study field | other developmental genes |
---|---|
Gene name | bmp3-like |
Description | NCBI BLASTP hit to ref|XP_001494823.2| |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_102538.1_06302.t1 | 1 | 1 | TGF_beta | 227 | 268 | 3.0e-14 | 53.1 | 5.7e-18 | 8.4e-14 | 51.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_102538.1_06302.t1 | gi|194206177|ref|XP_001494823.2| | PREDICTED: bone morphogenetic protein 3B [Equus caballus] | 8.0e-15 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
Transcript
Transcript ID | pfu_aug1.0_102538.1_06302.t1 |
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Definition | - |
>pfu_aug1.0_102538.1_06302.t1 atgagggccgaaagtttcggctggcagtggtatgacgtcaccaactcagtagtgagttgtctggcggcaaggcggaaaag acctcacttgtttgcgctggattttaaggcggagaaaacaaacggaaaatataaatctatcgcattaaagaagttcgtac gtcatcattccatgccatttttagttatttattcgaacgatactcaggaaaatcgctttgaccaattagattctttagcc gaaaaaatgttaagcgaaaattaccaacattctcaaagtgaaagtgaaagtggagagaaagaaattagctcaaatttgaa aaccaaagagcaaagacatgtaaatggggattcggaaaaagttgttatccgagaaaaacgatccatttttgacaatgaga taccggaaaccccgatggactatgggcttttcgaaaggagatacaatattccgcaaactcatccgggtattttacaaggc aggcgtcaaaagaagcccgtcattgcaaatcatcaacttataccgtatcccaaaaaatcgaatcgatcaagaaaaaggaa aaatcgaaacaaaaacagacgacggaaaaatcataggaagaacagacgaaagttaaagttccctaaagaatgggaagatt atcatcgcaatctagccaacgaagaaaacgccggaagtgtgtgtgggcgccggaagttggttgtgaacttcgcagacata ggctggggtgattggattatttccccgaagtcgtttgatgctcattattgcacgggaacctgtcctttcccacttactaa ggtgagaattctttatttctcaaacatatttatagttgctgatgtttaa |
Protein
Protein ID | pfu_aug1.0_102538.1_06302.t1 |
---|---|
Definition | - |
>pfu_aug1.0_102538.1_06302.t1 MRAESFGWQWYDVTNSVVSCLAARRKRPHLFALDFKAEKTNGKYKSIALKKFVRHHSMPFLVIYSNDTQENRFDQLDSLA EKMLSENYQHSQSESESGEKEISSNLKTKEQRHVNGDSEKVVIREKRSIFDNEIPETPMDYGLFERRYNIPQTHPGILQG RRQKKPVIANHQLIPYPKKSNRSRKRKNRNKNRRRKNHRKNRRKLKFPKEWEDYHRNLANEENAGSVCGRRKLVVNFADI GWGDWIISPKSFDAHYCTGTCPFPLTKVRILYFSNIFIVADV |