Gene
| Gene Model ID | pfu_aug1.0_10259.1_68161 |
|---|---|
| Locus | scaffold10259.1 : 22016 ... 24634 : + |
| To GenomeBrowser | scaffold10259.1:22016..24634 |
| Genes list of scaffold | scaffold10259.1 |
| Synonym | pfu_aug2.0_1140.1_01408 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_10259.1_68161.t1 | 2 | 1 | PAP2_C | 61 | 77 | 5.4e-24 | 84.2 | 0.18 | 890.0 | 0.2 |
| pfu_aug1.0_10259.1_68161.t1 | 2 | 2 | PAP2_C | 146 | 218 | 5.4e-24 | 84.2 | 1.1e-27 | 5.4e-24 | 84.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_10259.1_68161.t1 | gi|291235229|ref|XP_002737548.1| | PREDICTED: sphingomyelin synthase-related protein 1-like [Saccoglossus kowalevskii] | 5.04467e-44 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_10259.1_68161.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10259.1_68161.t1 atggaggctgtaaagctggtagtgagtttgctgtacgtggtatttgcccagctttttatgtgttttacggccattgtagt aacggatcgtctaccaaacaggactaagtaccagcccctccccgatgtggtgctggacaataccccctatatcccctggg ggtcggacacggcagagatatgtctagttacacttaacttcatggctataatgatggctgtatttcacaaagaacggagt ttattattaaggagattctctgtacttgctgggaatttagcctttctgagaagtgcctgtatctttgtaacatcggcgcc tgtggcggacgtcaatgaaatttgcatagtgaagccagaagattcttttggatatcgcctactaagggcgtgtcgggtgc ttgtacgtatgggctatacatccatgggctcggcccagtgtggggattatatattcagtggccacaccatgattatgacg ctgtgtaacttgtttcttaatgaatacacgcataaaagaatgcacgttatccgaattttaggatggatacttaattttgc gggtatgttatttcttatactaggtagaagccattatactgtagacgttattttaggattttatataacggttgccatga caaacaattaccatctaatggctcgcagtgaaagcgttctgtctaagcgtaaaatttaccactatttgatatttcccttg atgactctatttgttgctgacaatcaggaatgcagagtgaaagacaagaaagtgcagaacaattttgatattttcacaaa tcacaaggagaagaaatgcgacgagaagattttagtgtgctag |
|
Protein
| Protein ID | pfu_aug1.0_10259.1_68161.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10259.1_68161.t1 MEAVKLVVSLLYVVFAQLFMCFTAIVVTDRLPNRTKYQPLPDVVLDNTPYIPWGSDTAEICLVTLNFMAIMMAVFHKERS LLLRRFSVLAGNLAFLRSACIFVTSAPVADVNEICIVKPEDSFGYRLLRACRVLVRMGYTSMGSAQCGDYIFSGHTMIMT LCNLFLNEYTHKRMHVIRILGWILNFAGMLFLILGRSHYTVDVILGFYITVAMTNNYHLMARSESVLSKRKIYHYLIFPL MTLFVADNQECRVKDKKVQNNFDIFTNHKEKKCDEKILVC |
|