Gene
| Gene Model ID | pfu_aug1.0_1027.1_22407 |
|---|---|
| Locus | scaffold1027.1 : 15896 ... 31853 : + |
| To GenomeBrowser | scaffold1027.1:15896..31853 |
| Genes list of scaffold | scaffold1027.1 |
| Synonym | pfu_aug2.0_21.1_03433 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1027.1_22407.t1 | 1 | 1 | Peptidase_M24 | 126 | 296 | 7.5e-36 | 123.6 | 7.0e-40 | 1.0e-35 | 123.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1027.1_22407.t1 | gi|260814362|ref|XP_002601884.1| | hypothetical protein BRAFLDRAFT_59647 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1027.1_22407.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1027.1_22407.t1 atgcgggattttccgtgtcccggctgggacagatatttttggtcgcaaatgcgggacattttttgtcccggccgggacaa tggcaaaaaagttaaataccacgaagtttgcctaagacgcacaacttcgacaatgttagggaccatacaatttcctggtg agtcgaataaaacggactgctttaaagctttttggaatgaacataagaaggtgcacaagaaagcaagtaaggccatgata attaaatattttgttttacgacccctggaagtaccaatatggagagtactgattgtgttaagatatgactttacagacac caaagagaaccataccagatcacattccccgaccagattatgccgaacatcccgaaggtctgtaaatgaagtgatttgtc acggtatacctgacttaaggcctctagaagatggagacatagttaatattgatatcacagtgtttcacagaggttaccat ggtgacttaaacgaaacattctttgttggaaatgttgatgataaaagcaaaaagctggtaaaaactacacatgaatgttt gaagcaggcaatagatgaagtaaagcctggagttcgatacagagaaatgggtaatattatacagaagcacgctcaggcta acggcttctcagtggtcagaagttactgtggacatggcatacaccagttgtttcacacagcacccagtgttcctcattat agcaaaaacaaggctataggagtgatgaaacctggacattctttcaccatagagcctatgatttcagaaggaacttggcg agacgagatgtggccagacaactggacagcggtcactcaagatggaaaaagatctgcacaatttgaacacactctattag taactgacactggatgtgaaattctcacgcgacggagagacaatgacggaaaaccacattttatggacaaagaatga |
|
Protein
| Protein ID | pfu_aug1.0_1027.1_22407.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1027.1_22407.t1 MRDFPCPGWDRYFWSQMRDIFCPGRDNGKKVKYHEVCLRRTTSTMLGTIQFPGESNKTDCFKAFWNEHKKVHKKASKAMI IKYFVLRPLEVPIWRVLIVLRYDFTDTKENHTRSHSPTRLCRTSRRSVNEVICHGIPDLRPLEDGDIVNIDITVFHRGYH GDLNETFFVGNVDDKSKKLVKTTHECLKQAIDEVKPGVRYREMGNIIQKHAQANGFSVVRSYCGHGIHQLFHTAPSVPHY SKNKAIGVMKPGHSFTIEPMISEGTWRDEMWPDNWTAVTQDGKRSAQFEHTLLVTDTGCEILTRRRDNDGKPHFMDKE |
|