Gene
| Gene Model ID | pfu_aug1.0_1027.1_22408 |
|---|---|
| Locus | scaffold1027.1 : 32328 ... 63793 : - |
| To GenomeBrowser | scaffold1027.1:32328..63793 |
| Genes list of scaffold | scaffold1027.1 |
| Synonym | pfu_aug2.0_21.1_03434 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | Chitinase like protein |
| Description | Chitinase like protein, partial sequence. Hit to BLAST (NCBI, CAD31740.4). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1027.1_22408.t1 | 3 | 1 | Glyco_hydro_18 | 1 | 205 | 0.0 | 378.1 | 0.0 | 0.0 | 175.1 |
| pfu_aug1.0_1027.1_22408.t1 | 3 | 2 | Glyco_hydro_18 | 386 | 569 | 0.0 | 378.1 | 0.0 | 0.0 | 172.2 |
| pfu_aug1.0_1027.1_22408.t1 | 3 | 3 | Glyco_hydro_18 | 564 | 626 | 0.0 | 378.1 | 1.8e-12 | 8.8e-09 | 35.2 |
| pfu_aug1.0_1027.1_22408.t1 | 2 | 1 | CBM_14 | 697 | 718 | 5.1e-11 | 42.3 | 5.2e-06 | 0.026 | 14.4 |
| pfu_aug1.0_1027.1_22408.t1 | 2 | 2 | CBM_14 | 722 | 762 | 5.1e-11 | 42.3 | 2.3e-11 | 1.1e-07 | 31.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1027.1_22408.t1 | gi|21038943|emb|CAD31740.4| | chitinase [Tenebrio molitor] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1027.1_22408.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1027.1_22408.t1 gaattgcgacaagcattcgaaatcgaagcttctcaaactggcaatgacagattgctgcttactgctgctgtggctgctgg aaaaacgaatattgatggtgtttacgatgtacctctgatggctgcaaacatggactttatttgcctgatgacgtatgatt ttaacggagcctggggtagtgttactggtcacaacagtcctcttgatgcttcctcggctgatgcggacaaaacatggaac atgaaatgggcagctgcttactggcaccagctaggattgccaaaggacaagctgatagttggtctagccacttatgggcg agcctttactttgtctgatcccaacaattatggtgtaggtgcaccaacagtatcaggttcagcaccgtctggaccttata cgaaagaaaaaggattcttgtcctattatgagatttgcagtttgcagaacagtggctatggtaccacctaccgtgaccca gaagctatggtaccgtactttgtagagggcactgtatggatcggattcgatgacgaaataagcattcataacaaagtcaa gaattttattattcccaatggttacggaggtgctatggtgtgggcactcccacttgatgatttcaaagcaatgtgtggtc ccaagcgatatcctttgatcagcatcataaaggatgtgtttgaagctgaagagaatggcggatcagttaatccccctact gcagccccgacagtaccacctgcctcaacgcctgctcccacggcgggccctacagcaggtcctacacaaggccccacggc gggaccaactggtgccccaacaacccagtcacctggtggttcagttgaaatgattgttattggtgttttcaactccctaa atgttttgaagtcttcatttgtattcgatgtctacacgaaacgagacactgcatttctctgtaacacggaagaaattcaa tatttcatttcaataactttttatgaatctgaatatcatcttaatatcaaatgttggattgtattgctgttgacttctaa agaagcttctattccccagaataaagaaaagaaagtacccgagaccttccgaattgcaatttggaaggtatcggatacta gcctatacgacgaagagcaaggtgggtcaaaatataagagagtatgttactacactaattggtctcaatacagaagtgga ataggaaatttcatgcctgaagatattgacccattcttgtgtactcacatcatgtattccttcggaaagcttgaaggaaa taggattacaaactacgagtggaacgatccggatagtctctgggctgatggtctttacacacgagtaaataacctgaaga aacagaatacaaacttgaaggtcctcttagcaatgggaggctggaacgctgggagtgtagtgtactcccagatgtcttct acacccaacaacagaagggaatttattgactctgccctggagttcctgagagacaacaactttgatggacttgatatgga ctgggagtatccggcaagaaggggcggggccgccgctgattataccaactttggactgctagttcaggaacttcgtaagg catttgacgacgagctgttgcagactggaagagatcgattactgcttactgctgccgtagctgctggaaaaaccaatatt gatggagtctataacatttgtgagatgcagaacagtggcagcggtaccacttaccgtgatacagaggcgatggttccata ttacgtagatggcacaacatgggttggctttgatgacgaaattagtattcacaacaaagtcaagaatttcattattccca atgggtacggtggagctatggtgtgggcactaccacttgatgatttcaaagcacattgcacttcaaagaaatttcctctc atcagcaaaattagggaaatatttgatgctgaggaaaacggaggttcagtgaatccctcttctgcagccccaactgttct ccctgtctcgactcttgcccccactaaagtaccaacagcagtccctacaggtgctcctacaacgctttctcctggtgaca tggaattctgtgcaggcaaacctaatggcctacaaggtgatccgaccgactgcacggcatactacaactgttgggcagaa ttctgtgcagacaaacccaatggcctacaaggtgatccgaccgactgcatggcatactacaactgttgggctggtcaagg aagaaagttgaaatgttctcagggtttactgtggaatcagcagaattttgtgcaggcaaacccaatggcctacaaggtga tccgaccgactgcatggcatactacaactgttggtctggtcaaggaaaaaagttga |
|
Protein
| Protein ID | pfu_aug1.0_1027.1_22408.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1027.1_22408.t1 ELRQAFEIEASQTGNDRLLLTAAVAAGKTNIDGVYDVPLMAANMDFICLMTYDFNGAWGSVTGHNSPLDASSADADKTWN MKWAAAYWHQLGLPKDKLIVGLATYGRAFTLSDPNNYGVGAPTVSGSAPSGPYTKEKGFLSYYEICSLQNSGYGTTYRDP EAMVPYFVEGTVWIGFDDEISIHNKVKNFIIPNGYGGAMVWALPLDDFKAMCGPKRYPLISIIKDVFEAEENGGSVNPPT AAPTVPPASTPAPTAGPTAGPTQGPTAGPTGAPTTQSPGGSVEMIVIGVFNSLNVLKSSFVFDVYTKRDTAFLCNTEEIQ YFISITFYESEYHLNIKCWIVLLLTSKEASIPQNKEKKVPETFRIAIWKVSDTSLYDEEQGGSKYKRVCYYTNWSQYRSG IGNFMPEDIDPFLCTHIMYSFGKLEGNRITNYEWNDPDSLWADGLYTRVNNLKKQNTNLKVLLAMGGWNAGSVVYSQMSS TPNNRREFIDSALEFLRDNNFDGLDMDWEYPARRGGAAADYTNFGLLVQELRKAFDDELLQTGRDRLLLTAAVAAGKTNI DGVYNICEMQNSGSGTTYRDTEAMVPYYVDGTTWVGFDDEISIHNKVKNFIIPNGYGGAMVWALPLDDFKAHCTSKKFPL ISKIREIFDAEENGGSVNPSSAAPTVLPVSTLAPTKVPTAVPTGAPTTLSPGDMEFCAGKPNGLQGDPTDCTAYYNCWAE FCADKPNGLQGDPTDCMAYYNCWAGQGRKLKCSQGLLWNQQNFVQANPMAYKVIRPTAWHTTTVGLVKEKS |
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