Gene
| Gene Model ID | pfu_aug1.0_10271.1_68167 |
|---|---|
| Locus | scaffold10271.1 : 930 ... 16815 : - |
| To GenomeBrowser | scaffold10271.1:930..16815 |
| Genes list of scaffold | scaffold10271.1 |
| Synonym | pfu_aug2.0_784.1_14557 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_10271.1_68167.t1 | 5 | 1 | Cadherin_2 | 24 | 109 | 1.2e-17 | 63.2 | 5.8e-17 | 2.9e-13 | 49.1 |
| pfu_aug1.0_10271.1_68167.t1 | 7 | 1 | Cadherin | 27 | 96 | 0.0 | 299.8 | 2.7e-09 | 1.3e-05 | 25.3 |
| pfu_aug1.0_10271.1_68167.t1 | 7 | 2 | Cadherin | 141 | 232 | 0.0 | 299.8 | 2.5e-14 | 1.2e-10 | 41.4 |
| pfu_aug1.0_10271.1_68167.t1 | 5 | 2 | Cadherin_2 | 172 | 204 | 1.2e-17 | 63.2 | 0.11 | 540.0 | 0.2 |
| pfu_aug1.0_10271.1_68167.t1 | 7 | 3 | Cadherin | 247 | 341 | 0.0 | 299.8 | 4.0e-19 | 2.0e-15 | 56.8 |
| pfu_aug1.0_10271.1_68167.t1 | 7 | 4 | Cadherin | 361 | 450 | 0.0 | 299.8 | 9.5e-13 | 4.7e-09 | 36.3 |
| pfu_aug1.0_10271.1_68167.t1 | 5 | 3 | Cadherin_2 | 405 | 423 | 1.2e-17 | 63.2 | 0.056 | 280.0 | 1.1 |
| pfu_aug1.0_10271.1_68167.t1 | 7 | 5 | Cadherin | 466 | 554 | 0.0 | 299.8 | 2.7e-22 | 1.4e-18 | 66.9 |
| pfu_aug1.0_10271.1_68167.t1 | 5 | 4 | Cadherin_2 | 501 | 527 | 1.2e-17 | 63.2 | 0.039 | 190.0 | 1.6 |
| pfu_aug1.0_10271.1_68167.t1 | 5 | 5 | Cadherin_2 | 569 | 627 | 1.2e-17 | 63.2 | 0.023 | 110.0 | 2.4 |
| pfu_aug1.0_10271.1_68167.t1 | 7 | 6 | Cadherin | 571 | 658 | 0.0 | 299.8 | 3.3e-13 | 1.7e-09 | 37.8 |
| pfu_aug1.0_10271.1_68167.t1 | 7 | 7 | Cadherin | 685 | 765 | 0.0 | 299.8 | 8.8e-15 | 4.3e-11 | 42.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_10271.1_68167.t1 | gi|334350360|ref|XP_001374577.2| | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_10271.1_68167.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10271.1_68167.t1 atgtctagtcaaacagcggtgctagtgttgtccagtttgttactgctggtcactaggtcacattctcaggatctccaata cacaatcaaggaagaaagatcgtccggtagtaaaataggaaacatcgtcaacgattcaacggtgctagatagaacaatct cgggagtggaatacagaattctgactcaggggaatgaattcgcaaaatattttcgaatcgacaacagaactggagattta tttacatcagaagttctagacagagagagtttaacagattgtgaattttcagatgtttgtacgattccgctcgaaattat agcacaagcaccgggtggacgttactttaagaaggtgggaatccagtttataatagaggatatcaatgataatgcaccta aattcacttccaatcagacaactgtagaaatatcagagtcgtctgctactggggaatccttatcactagagggcgctgta gacttagatatcggtatcaattctgtgctgacttatagaatcgttccttccgaaaatgttccttttgtagtcgtggatga taaaagtccaattattaaacttcagctggtccaaaaaatcgacagagaaacaacagacaagtatcagtttcaaattctag ctatagacggcggaagtgtgccattaactggagctctggaagtcactgttctaataacagataataatgacaacaaacca aagtttttacagcctgtgttcaatatatcaatagacgaggatttggcggtaaattctgtcattctgaatatcagtgcaac tgacccggacgaaggcgtgaatggtgaagtttcgtatcgtctcagttcacaccaatcagaggaaattcgaaacatgtttg ccatcgactctgcacttggaaacttgacaataatcaaacctcttacatatcaaccaggagaaacattaaaaatcatcatc gaagcgtcggataacgctattcaaccactgatatctcaagctatcgtgtacgtcaaagttctcgattccacgaatgacgt accggaaatacacgtaaacttgctatcgagttcaagccgcgcaagcatagctgaaaacgcaacaatcggcgcagctgtcg ctcacgtaaaagtaacggatgacgatttgggaacaaacggctatgtcaattgttctgtgacacggggacacgagttcttt ggtcttgaaaaactggatgtgaacgaatacaaagttgtggtatctgcaaaacttgatcgcgagaagaaagcatttcatga cgtcactgtcacgtgtcaggactttggagtcccttcattgaacgcgtcagaaaattttgaagtcgaaattttggatataa atgaagaaccgccaaaattcgtgaaaagcatatttgaagttagtataacagaaaacaacaatatcggagcgttacttaca actgtgtctgctatagacacggatagtggaatgaatgccagaatacgatattcattactgcagacgggaaaatataattt tgtcattgattccgttacaggggaaattcgagtaaattttgtactagacagggagacggtacccgaaataacgtttaaag ttgcggcatctgacagtggtgtacaacctaagacaggtctggccactgtcatagttattatactggacgataacgataac gatccaagttttgaaaatcagccaattacactctccgtcctggaaaaccaaccaatcgacacatttgttggaaaagttaa ggcaaccgacattgatgctagagaaaatggcactgttaaatacaaaatgaaggaccagttgtctacattttggatttcgg acaatgggtcgatatttacgaaagacatcatagatcgtgagttatatccacatggaatcacattgagtgtaatagcatac gatcaaggtcaaatcattagtagaaatgcgtctgcacttgtaactgtacttgtaacggacatcaacgacaacgctccgat tcttgtgtttccaaacgaagttaaccgaacaatcacgatgatttacgatcttccagaagggaccatcatagggcgtgtgg aggctgaggataaagactatagtatcaacgctaaactcacatactcatttagtgaaaaaagcgcgcacttgctctttcgt atagatggcgacaccggtgaaataaaaaccgccagatcttttactacccaagacatcaatcgatatgtatttaccattac agtggaagatcaaggtgttccgaaatattctgtcaaccatacattgatcgtagcaattatttcaaacatctatgaaccta taccgagatttaaggaggaaggaggggacagttatcttctcattgctgtcgtcatatcctgtgttaccgttgttttggcg ggagttatcattttggttatattcttactcagaagaattgatcagaagaaacgcgagcacgaaaatgccacccaccaaga acaacttgcaaatagtcagaaatctggactgtacgacgcattggatgtaagccgagacctaccgaagaccaaaagtgaaa aacgagtcagtttctcggattccctggaaagtacggacactcctatagaaaggccatccttcaagatgactcctagtaaa gaaaaaatagaacagttactggatcagatatcgacccctcccacagcccgggagtctcaggttcgctcccttggattacg gtcccccggtcgccagaaccccagatcatcgtctgtgttgatgccatcatctatgttgttggcgcgactcttgttgtag |
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Protein
| Protein ID | pfu_aug1.0_10271.1_68167.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10271.1_68167.t1 MSSQTAVLVLSSLLLLVTRSHSQDLQYTIKEERSSGSKIGNIVNDSTVLDRTISGVEYRILTQGNEFAKYFRIDNRTGDL FTSEVLDRESLTDCEFSDVCTIPLEIIAQAPGGRYFKKVGIQFIIEDINDNAPKFTSNQTTVEISESSATGESLSLEGAV DLDIGINSVLTYRIVPSENVPFVVVDDKSPIIKLQLVQKIDRETTDKYQFQILAIDGGSVPLTGALEVTVLITDNNDNKP KFLQPVFNISIDEDLAVNSVILNISATDPDEGVNGEVSYRLSSHQSEEIRNMFAIDSALGNLTIIKPLTYQPGETLKIII EASDNAIQPLISQAIVYVKVLDSTNDVPEIHVNLLSSSSRASIAENATIGAAVAHVKVTDDDLGTNGYVNCSVTRGHEFF GLEKLDVNEYKVVVSAKLDREKKAFHDVTVTCQDFGVPSLNASENFEVEILDINEEPPKFVKSIFEVSITENNNIGALLT TVSAIDTDSGMNARIRYSLLQTGKYNFVIDSVTGEIRVNFVLDRETVPEITFKVAASDSGVQPKTGLATVIVIILDDNDN DPSFENQPITLSVLENQPIDTFVGKVKATDIDARENGTVKYKMKDQLSTFWISDNGSIFTKDIIDRELYPHGITLSVIAY DQGQIISRNASALVTVLVTDINDNAPILVFPNEVNRTITMIYDLPEGTIIGRVEAEDKDYSINAKLTYSFSEKSAHLLFR IDGDTGEIKTARSFTTQDINRYVFTITVEDQGVPKYSVNHTLIVAIISNIYEPIPRFKEEGGDSYLLIAVVISCVTVVLA GVIILVIFLLRRIDQKKREHENATHQEQLANSQKSGLYDALDVSRDLPKTKSEKRVSFSDSLESTDTPIERPSFKMTPSK EKIEQLLDQISTPPTARESQVRSLGLRSPGRQNPRSSSVLMPSSMLLARLLL |
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