Gene
| Gene Model ID | pfu_aug1.0_10289.1_68170 |
|---|---|
| Locus | scaffold10289.1 : 110 ... 19165 : - |
| To GenomeBrowser | scaffold10289.1:110..19165 |
| Genes list of scaffold | scaffold10289.1 |
| Synonym | pfu_aug2.0_1167.1_24740 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_10289.1_68170.t1 | 2 | 1 | RRM_6 | 2 | 57 | 5.5e-15 | 55.1 | 1.4e-12 | 7.1e-09 | 35.5 |
| pfu_aug1.0_10289.1_68170.t1 | 2 | 1 | RRM_1 | 3 | 60 | 3.3e-23 | 81.0 | 2.0e-11 | 1.0e-07 | 31.4 |
| pfu_aug1.0_10289.1_68170.t1 | 2 | 1 | RRM_5 | 17 | 59 | 2.7e-06 | 27.1 | 4.6e-07 | 0.0023 | 17.7 |
| pfu_aug1.0_10289.1_68170.t1 | 2 | 2 | RRM_1 | 85 | 153 | 3.3e-23 | 81.0 | 1.6e-16 | 7.8e-13 | 47.8 |
| pfu_aug1.0_10289.1_68170.t1 | 2 | 2 | RRM_6 | 85 | 147 | 5.5e-15 | 55.1 | 4.9e-07 | 0.0024 | 17.7 |
| pfu_aug1.0_10289.1_68170.t1 | 2 | 2 | RRM_5 | 122 | 160 | 2.7e-06 | 27.1 | 0.00095 | 4.7 | 7.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_10289.1_68170.t1 | gi|260829407|ref|XP_002609653.1| | hypothetical protein BRAFLDRAFT_123569 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_10289.1_68170.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10289.1_68170.t1 atggatgaagaatttattggaaatgcttttaaagaaatgggagtgtcagtaaagggaattaaagtgatcaagagtaaaat gacaggactgccagcgggttactgctttattgactttcacactcaagagaaagcccgtgaagctatgctgaaattaagcg gaaaaaatatccccaacagtaatccacctaaaagattcaaacttaacagcgccagttatggcaaagaacatcttcacatg ccagagttttcactttttgttggagatttaacagaggacgtagatgattacaccttgtactatgaatttgctaaaagata ccgttcatgtagatctgctaaagttgtacaggaccagaacggtaaaagtaaaggttacggatttgtaagatttacagagg agactgaccaacagagagcactcatagagatgcagcacatgaatggtatcggcaaaaagccgattagggtcagtctggcc acacctaaaagaccactccccccagacatgatgggcgtacactacagtcattattatggacataattacccatatagcag tacatactataattactatggatcacacacaccatatggaaactacgacaaccaaagtagctatgtgagtataacattgt ctgatactgtgcagggcttacaatctgcccagtatggctgtattgggccgatattgtgcccaatgagtcccaatgtaaaa tag |
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Protein
| Protein ID | pfu_aug1.0_10289.1_68170.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10289.1_68170.t1 MDEEFIGNAFKEMGVSVKGIKVIKSKMTGLPAGYCFIDFHTQEKAREAMLKLSGKNIPNSNPPKRFKLNSASYGKEHLHM PEFSLFVGDLTEDVDDYTLYYEFAKRYRSCRSAKVVQDQNGKSKGYGFVRFTEETDQQRALIEMQHMNGIGKKPIRVSLA TPKRPLPPDMMGVHYSHYYGHNYPYSSTYYNYYGSHTPYGNYDNQSSYVSITLSDTVQGLQSAQYGCIGPILCPMSPNVK |
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