pfu_aug1.0_1032.1_29546: Genome browser

Gene

Gene Model ID	pfu_aug1.0_1032.1_29546
Locus	scaffold1032.1 : 91985 ... 106795 : -
To GenomeBrowser	scaffold1032.1:91985..106795
Genes list of scaffold	scaffold1032.1
Synonym	pfu_aug2.0_1853.1_11907

Manual annotation

Study field	signal molecules
Gene name	tyrosinase
Description	Highest BLAST hit to DQ112679.1 Pinctada fucata tyrosinase mRNA, complete cds
mRNA evidence

Study field	Biomineralization
Gene name	tyrosinase-like protein 3
Description	NCBI BLASTP best hit to AAZ66340
mRNA evidence

Hmmer Search for Pfam

query	Total	ID	Target	From	To	Eval	Score	cEval	iEval	Score
pfu_aug1.0_1032.1_29546.t1	1	1	Tyrosinase	116	310	2.6e-30	106.2	3.3e-34	4.9e-30	105.3

Transcript

Transcript ID	pfu_aug1.0_1032.1_29546.t1
Definition	-
>pfu_aug1.0_1032.1_29546.t1 atggaatttcgatgtttgaccgaggttcgaagcttgtttgtccgagtacaacaggtgaaagtgttctttgaaacacatga cttctcgcgctgctatggcacagatcaacatcttcctgaatgtgccaagctgtttcgggaagccgtaaatatcacccact tcagtaaaaaagaaatcgaaatagtaaattcattgacgaatgaagtgattgctgaaacatcgctgagtagcaggggtaaa agaaacataaaacgacttcgaatacgacgggaatgcagaactttatcagagaaatcacgtaataggatctttcaagcaat ggttcaaatgaaacaaggacccgagaatatgtatgacgtcttcgcaaaaatccacttgaacccagaatccttggaaaatg ctcacataggttcaaatttcgcaggatggcatcgtatctacgtgttattctttgaaaatgcacttcgaagaatagcccct ggattagttctttgttactgggatcctacccttgattatttgatgcctggtactcaacaagttcattctgtcactttctc tgataaattatttggtaatgggtacggcactgttataaatggaccctttaggaattggaaattgtttcaaccatacaact atagactcaggcgaaacatcggccaggagggcagtttgacaagaccggaagtcgtagatctaatagccttcaatcctaaa attataaggacgactcaaatcgtagcgggaagcggcgcacagggattcgatgatcccgatactggaatgcgccacagttt agaaagatgtcatgacaacacacacgtgtacattggtggagttttcacaagtctcaaagtcacagcacaagatcctgttt tctggtttttccatgcctatattgactatgtttgggaattgtttagacaaaaacagcgaaaacacggtatagatccctcc aaggactatcctgagcatggcggcgaggaccacaaagcaataagaaccatggtgcctttctttgcttttaggaatattga tggatacagcaatatgtttacagagaaaatatatagatatgctccccacccaacatgtggaaacagatgtggtggagcct caaagaaattcttgtattgtccacgtcgtcatcatcgccgtacgagatgcgtctctagatcatctaacgtagatatcgtg ccggataaaacgttgaaagaaattgaaaatcccgtcctagaaaaatttgtcaggggtaacttggctagcagggcaatagt taatgcgatctcactcgaagttgctaagaaagacggcaaggttgagttacctgacccccgtttctcggcagcatttaatg atgatagagtcgttgtcgatcagaaggatccatatttcaaaaacggtgtacattag

Transcript ID

pfu_aug1.0_1032.1_29546.t1

Definition

>pfu_aug1.0_1032.1_29546.t1
atggaatttcgatgtttgaccgaggttcgaagcttgtttgtccgagtacaacaggtgaaagtgttctttgaaacacatga
cttctcgcgctgctatggcacagatcaacatcttcctgaatgtgccaagctgtttcgggaagccgtaaatatcacccact
tcagtaaaaaagaaatcgaaatagtaaattcattgacgaatgaagtgattgctgaaacatcgctgagtagcaggggtaaa
agaaacataaaacgacttcgaatacgacgggaatgcagaactttatcagagaaatcacgtaataggatctttcaagcaat
ggttcaaatgaaacaaggacccgagaatatgtatgacgtcttcgcaaaaatccacttgaacccagaatccttggaaaatg
ctcacataggttcaaatttcgcaggatggcatcgtatctacgtgttattctttgaaaatgcacttcgaagaatagcccct
ggattagttctttgttactgggatcctacccttgattatttgatgcctggtactcaacaagttcattctgtcactttctc
tgataaattatttggtaatgggtacggcactgttataaatggaccctttaggaattggaaattgtttcaaccatacaact
atagactcaggcgaaacatcggccaggagggcagtttgacaagaccggaagtcgtagatctaatagccttcaatcctaaa
attataaggacgactcaaatcgtagcgggaagcggcgcacagggattcgatgatcccgatactggaatgcgccacagttt
agaaagatgtcatgacaacacacacgtgtacattggtggagttttcacaagtctcaaagtcacagcacaagatcctgttt
tctggtttttccatgcctatattgactatgtttgggaattgtttagacaaaaacagcgaaaacacggtatagatccctcc
aaggactatcctgagcatggcggcgaggaccacaaagcaataagaaccatggtgcctttctttgcttttaggaatattga
tggatacagcaatatgtttacagagaaaatatatagatatgctccccacccaacatgtggaaacagatgtggtggagcct
caaagaaattcttgtattgtccacgtcgtcatcatcgccgtacgagatgcgtctctagatcatctaacgtagatatcgtg
ccggataaaacgttgaaagaaattgaaaatcccgtcctagaaaaatttgtcaggggtaacttggctagcagggcaatagt
taatgcgatctcactcgaagttgctaagaaagacggcaaggttgagttacctgacccccgtttctcggcagcatttaatg
atgatagagtcgttgtcgatcagaaggatccatatttcaaaaacggtgtacattag

Protein

Protein ID	pfu_aug1.0_1032.1_29546.t1
Definition	-
>pfu_aug1.0_1032.1_29546.t1 MEFRCLTEVRSLFVRVQQVKVFFETHDFSRCYGTDQHLPECAKLFREAVNITHFSKKEIEIVNSLTNEVIAETSLSSRGK RNIKRLRIRRECRTLSEKSRNRIFQAMVQMKQGPENMYDVFAKIHLNPESLENAHIGSNFAGWHRIYVLFFENALRRIAP GLVLCYWDPTLDYLMPGTQQVHSVTFSDKLFGNGYGTVINGPFRNWKLFQPYNYRLRRNIGQEGSLTRPEVVDLIAFNPK IIRTTQIVAGSGAQGFDDPDTGMRHSLERCHDNTHVYIGGVFTSLKVTAQDPVFWFFHAYIDYVWELFRQKQRKHGIDPS KDYPEHGGEDHKAIRTMVPFFAFRNIDGYSNMFTEKIYRYAPHPTCGNRCGGASKKFLYCPRRHHRRTRCVSRSSNVDIV PDKTLKEIENPVLEKFVRGNLASRAIVNAISLEVAKKDGKVELPDPRFSAAFNDDRVVVDQKDPYFKNGVH

Protein ID

pfu_aug1.0_1032.1_29546.t1

Definition

>pfu_aug1.0_1032.1_29546.t1
MEFRCLTEVRSLFVRVQQVKVFFETHDFSRCYGTDQHLPECAKLFREAVNITHFSKKEIEIVNSLTNEVIAETSLSSRGK
RNIKRLRIRRECRTLSEKSRNRIFQAMVQMKQGPENMYDVFAKIHLNPESLENAHIGSNFAGWHRIYVLFFENALRRIAP
GLVLCYWDPTLDYLMPGTQQVHSVTFSDKLFGNGYGTVINGPFRNWKLFQPYNYRLRRNIGQEGSLTRPEVVDLIAFNPK
IIRTTQIVAGSGAQGFDDPDTGMRHSLERCHDNTHVYIGGVFTSLKVTAQDPVFWFFHAYIDYVWELFRQKQRKHGIDPS
KDYPEHGGEDHKAIRTMVPFFAFRNIDGYSNMFTEKIYRYAPHPTCGNRCGGASKKFLYCPRRHHRRTRCVSRSSNVDIV
PDKTLKEIENPVLEKFVRGNLASRAIVNAISLEVAKKDGKVELPDPRFSAAFNDDRVVVDQKDPYFKNGVH

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OIST Marine Genomics Unit since 2008