Gene
| Gene Model ID | pfu_aug1.0_10348.1_53528 |
|---|---|
| Locus | scaffold10348.1 : 26976 ... 49890 : + |
| To GenomeBrowser | scaffold10348.1:26976..49890 |
| Genes list of scaffold | scaffold10348.1 |
| Synonym | pfu_aug2.0_257.1_23763 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_10348.1_53528.t1 | 8 | 1 | ATS3 | 14 | 114 | 9.4e-21 | 73.7 | 1.2e-05 | 0.088 | 12.3 |
| pfu_aug1.0_10348.1_53528.t1 | 10 | 1 | PLAT | 15 | 122 | 0.0 | 587.1 | 2.4e-19 | 1.8e-15 | 57.2 |
| pfu_aug1.0_10348.1_53528.t1 | 8 | 2 | ATS3 | 142 | 228 | 9.4e-21 | 73.7 | 0.00014 | 1.1 | 8.8 |
| pfu_aug1.0_10348.1_53528.t1 | 10 | 2 | PLAT | 144 | 250 | 0.0 | 587.1 | 7.3e-27 | 5.4e-23 | 81.5 |
| pfu_aug1.0_10348.1_53528.t1 | 8 | 3 | ATS3 | 266 | 362 | 9.4e-21 | 73.7 | 7.4e-06 | 0.055 | 13.0 |
| pfu_aug1.0_10348.1_53528.t1 | 10 | 3 | PLAT | 273 | 361 | 0.0 | 587.1 | 8.8e-22 | 6.5e-18 | 65.1 |
| pfu_aug1.0_10348.1_53528.t1 | 8 | 4 | ATS3 | 477 | 569 | 9.4e-21 | 73.7 | 0.0013 | 9.8 | 5.7 |
| pfu_aug1.0_10348.1_53528.t1 | 10 | 4 | PLAT | 479 | 585 | 0.0 | 587.1 | 5.3e-24 | 3.9e-20 | 72.3 |
| pfu_aug1.0_10348.1_53528.t1 | 10 | 5 | PLAT | 620 | 699 | 0.0 | 587.1 | 2.7e-09 | 2.0e-05 | 24.9 |
| pfu_aug1.0_10348.1_53528.t1 | 8 | 5 | ATS3 | 714 | 833 | 9.4e-21 | 73.7 | 4.7e-07 | 0.0035 | 16.9 |
| pfu_aug1.0_10348.1_53528.t1 | 10 | 6 | PLAT | 725 | 839 | 0.0 | 587.1 | 4.5e-25 | 3.3e-21 | 75.7 |
| pfu_aug1.0_10348.1_53528.t1 | 8 | 6 | ATS3 | 904 | 972 | 9.4e-21 | 73.7 | 0.3 | 2200.0 | -1.9 |
| pfu_aug1.0_10348.1_53528.t1 | 10 | 7 | PLAT | 906 | 1020 | 0.0 | 587.1 | 1.7e-20 | 1.3e-16 | 60.9 |
| pfu_aug1.0_10348.1_53528.t1 | 8 | 7 | ATS3 | 1033 | 1060 | 9.4e-21 | 73.7 | 0.28 | 2100.0 | -1.8 |
| pfu_aug1.0_10348.1_53528.t1 | 10 | 8 | PLAT | 1038 | 1141 | 0.0 | 587.1 | 3.6e-19 | 2.7e-15 | 56.7 |
| pfu_aug1.0_10348.1_53528.t1 | 8 | 8 | ATS3 | 1161 | 1254 | 9.4e-21 | 73.7 | 0.0017 | 13.0 | 5.3 |
| pfu_aug1.0_10348.1_53528.t1 | 10 | 9 | PLAT | 1165 | 1276 | 0.0 | 587.1 | 3.4e-25 | 2.5e-21 | 76.1 |
| pfu_aug1.0_10348.1_53528.t1 | 10 | 10 | PLAT | 1296 | 1345 | 0.0 | 587.1 | 2.2e-13 | 1.7e-09 | 38.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_10348.1_53528.t1 | gi|348576675|ref|XP_003474112.1| | PREDICTED: lipoxygenase homology domain-containing protein 1 isoform 1 [Cavia porcellus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_10348.1_53528.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10348.1_53528.t1 atgaagagacttaatgagtattttgactttttagtggttaaataccaagtggaggtttacacagggaagaaatctggagc aggcactgatgctaatgtcttcttgaccatatttggtgagttaggagacacaggcaggcgattcctgagacactcgtcaa caaatatcaacaagtttgagaaagggcagtgtgatatgtttgagattgaggctgtgactctagagaagatttccaagatt caaatagggcatgatgggaagggaatcggagctggttggtatctcgacaaagttgtcatcaaaaatccatcacagccaaa acacaatgtcacatttgaatgtttctgttggcttgctgaggacgagggtacaggggagatagtgaaggagtttacagtgt cgggatcccagatgttaggaaaaacaacgtacaacgtccatgttaaaacaggagatgaacgttactcaggtacagatgcc aatgtatacctgcagatatacggctctaagggtgatactggagagcttcatctacgacaatcagaaaaccactctaacaa gtttgagaggggtaaaactgatcacttcaaattggaggccactgatataggaaagatcaagaagataaagattggccatg atggcaagaaccccgggtcaggttggttcctggatgaggtccgtatcgacattccttcacgtggggagcagtacgtgttt gcttgtcacagatggctagacaaagacgaaggtgacgggttgatagagctcgaactagagccatcctggaaggaagacag ggaaaaaacaataccgtatgaagtaactgtatggacaggagataaacgaggagctgggacagatgcccgggttttcctac agatttatggtaaagatgggaggacagaggatatagaactagataacaagtcagataactttgagaggaacaaagtggac aagttcaagattgagggtaaagatgtaggtcagattgtaaagataaggattggtcatgatggcaccagtatgggagacgg ctggtatctagacaagctactaattcagaggaagcctcgcaaaccaacaaagaaacaaaaaggaaagaaacgaccacctt ctgcagtagagagacggcagtctatcctagccgacaaaatgcagagtgacagtttagactctgatggcagtacctcatct tcaaccacacctagacgcaggaagagtctcaagcggagaccttcagatctgtcggcagtgaaggaagagagtgaggagga ggaggcgtacgatgaacaagatgagacggaggattactggttctttgtagataaatggttcgccaagagtgaaggagata aacaaatagtacgagaacttatacccacagataaagatggccgaccactcaaaggggcactagatgatgtggagtatata gttagagtatacacaggcactgtgtcgggagcaggaactgacgccaatgtatttataacattatatggtaaaacagattc tggagagaggcaattaaaagagagtaacaaattcaacaaatttgagaatggacaggaggatatctttaaggtacaagcca aagaactaggtcctctgaccaaggtccgaatccgccatgataacactggcctgctgggagctgcctggttcttagaccgc atagaagtagaggatacaaagaaaaagaaaacgtactacttcctgtgtcagagatggttggctactggggaagacgacgg tcagatttgccgagaacttgtagccgtggacaaagctctgataaccaagatggcaaattctaaagacgctgcaaggaaag aagttgccttagaaaccaaaggtactgatgccaatgtgttcttacgactttttggggatcaagacaacacagagaagata cctttgaaatcttccctcacgtacaaggataagtttgagagaaaccatactgatgagtttatactagaagttgtgaatat tggggaactcagtaaagtcaatttcccatgtaatcgctggttagcaagagacgaagaagataaggctatagaaagagagc tggttccggagagagtcacaaaggaagtcattaaagatggaaaaatacagcaaaaagagatgaaagtcaaaaatcaactg gaattgaaaaactacacagtaaatgtgcagacgatggatgtatcaggtgcagggacggatgctaacgtctttataaatgt ttacggagacaaagggaactcaggagaaagaaaactagccaagtcagagacgtacagagataaatttgagagaggacata aagatgtattcaaaattgaagccagagacttgggtaatatatacaagctcaaaattcaccatgacaacaagaactttggg ccgtcatggtatctggactatgtggaagtggtagacaactcggacaagaatcagtcatacatgttccattgtgagagatg gttagccaaaaacaaggatgatggcaagatagaaaggacattgtatgtcaagggttatgagggagagatgggctccagta caggtaccctgagatctaccaagtacggttcagtagctagtctggactctatgaagagttccgacccattctctaagagc ccacgcgtgtcacgtaaacagctgatgcaagcagaggaggatgaggaaaatctggcccatggggatccgattacgtacaa tgtgaaggtttggactggtgaaggagaagacaatggtacagatagtaatgtatgggtgaagattgtgggaccgaggggta tacatacaggcaaacagttcttggagttcgcacagaaagacaagtttgatcctggctcggtcaaagtgttctcttttgat gctccagatgtgaatgaagtaaaaaagatagaggttggacatgatggcacggctcccggcagtgactggttcctgaagga catcagtatcaacatccccacaaaggggagacaatactcgtttaactgtaaacagtggcttggacgtcataaaggggatg gcaaaactgtacgcacatttaggcttgatgatggactcagtcaaatcacaaagtacaaagccatggtaccatatgaggtg accatacagaccggtgacaaacctgaggcaggcaccgacatggagatctatatgacggtgttcggtgccaaaggctctac agctcctttactaatggagaaaggtacagagagattcgaaagggacagagcagatttcatcaggcttgagctagatgaca tagctccattaaagaaaatacgactagaagtcagtggaaagggcagcagaccacagtggtatctagatcatattgagtta agaaatatggacacaggtaccctgtcaaggtttgagtgtaatgattggtttggtaaaaagaaaggggatggtaaactcgt cagagatgtacctgctaaagaacgtggaaaacttgttataaacaacacaacctataagatatctgtgaagacgtcggacg ttccaggggcgggcactaatgccaacgtgtattgtatcctgtttgggttgaatggtgactcgggagagcttcatctgaaa aaatcagaaaccaacaaagatccttttgaaaataatcaaactgatgtgttcacattccaagatgttctaagtgtgggtga actgtccaaatgtagagtctggcatgataataaaggatttggatcggcctggcaccttgaccatatagaggttgaggaca tagggactaagaagaagtatttgtttcactgtggtaaatggctgtctaagagtgaggatgacaaacaaattttacgggaa ctgacttgcgctaatgctgctcgacctctgactccggggtcaaaggacgaagttggagaaataaccaaggtcagaataga gcatgacaatgctaacttccggcctggttggtttttggacaaaattgaggtgaccaatctggcaactagtcataaaacaa cattcccatgtggtcagtggctggacaaaaacaaggaggatggtgccatttctagagacttgatgcccatggactga |
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Protein
| Protein ID | pfu_aug1.0_10348.1_53528.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10348.1_53528.t1 MKRLNEYFDFLVVKYQVEVYTGKKSGAGTDANVFLTIFGELGDTGRRFLRHSSTNINKFEKGQCDMFEIEAVTLEKISKI QIGHDGKGIGAGWYLDKVVIKNPSQPKHNVTFECFCWLAEDEGTGEIVKEFTVSGSQMLGKTTYNVHVKTGDERYSGTDA NVYLQIYGSKGDTGELHLRQSENHSNKFERGKTDHFKLEATDIGKIKKIKIGHDGKNPGSGWFLDEVRIDIPSRGEQYVF ACHRWLDKDEGDGLIELELEPSWKEDREKTIPYEVTVWTGDKRGAGTDARVFLQIYGKDGRTEDIELDNKSDNFERNKVD KFKIEGKDVGQIVKIRIGHDGTSMGDGWYLDKLLIQRKPRKPTKKQKGKKRPPSAVERRQSILADKMQSDSLDSDGSTSS STTPRRRKSLKRRPSDLSAVKEESEEEEAYDEQDETEDYWFFVDKWFAKSEGDKQIVRELIPTDKDGRPLKGALDDVEYI VRVYTGTVSGAGTDANVFITLYGKTDSGERQLKESNKFNKFENGQEDIFKVQAKELGPLTKVRIRHDNTGLLGAAWFLDR IEVEDTKKKKTYYFLCQRWLATGEDDGQICRELVAVDKALITKMANSKDAARKEVALETKGTDANVFLRLFGDQDNTEKI PLKSSLTYKDKFERNHTDEFILEVVNIGELSKVNFPCNRWLARDEEDKAIERELVPERVTKEVIKDGKIQQKEMKVKNQL ELKNYTVNVQTMDVSGAGTDANVFINVYGDKGNSGERKLAKSETYRDKFERGHKDVFKIEARDLGNIYKLKIHHDNKNFG PSWYLDYVEVVDNSDKNQSYMFHCERWLAKNKDDGKIERTLYVKGYEGEMGSSTGTLRSTKYGSVASLDSMKSSDPFSKS PRVSRKQLMQAEEDEENLAHGDPITYNVKVWTGEGEDNGTDSNVWVKIVGPRGIHTGKQFLEFAQKDKFDPGSVKVFSFD APDVNEVKKIEVGHDGTAPGSDWFLKDISINIPTKGRQYSFNCKQWLGRHKGDGKTVRTFRLDDGLSQITKYKAMVPYEV TIQTGDKPEAGTDMEIYMTVFGAKGSTAPLLMEKGTERFERDRADFIRLELDDIAPLKKIRLEVSGKGSRPQWYLDHIEL RNMDTGTLSRFECNDWFGKKKGDGKLVRDVPAKERGKLVINNTTYKISVKTSDVPGAGTNANVYCILFGLNGDSGELHLK KSETNKDPFENNQTDVFTFQDVLSVGELSKCRVWHDNKGFGSAWHLDHIEVEDIGTKKKYLFHCGKWLSKSEDDKQILRE LTCANAARPLTPGSKDEVGEITKVRIEHDNANFRPGWFLDKIEVTNLATSHKTTFPCGQWLDKNKEDGAISRDLMPMD |
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