Gene
| Gene Model ID | pfu_aug1.0_10348.1_53529 |
|---|---|
| Locus | scaffold10348.1 : 52579 ... 64735 : - |
| To GenomeBrowser | scaffold10348.1:52579..64735 |
| Genes list of scaffold | scaffold10348.1 |
| Synonym | pfu_aug2.0_257.1_23765 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_10348.1_53529.t1 | 1 | 1 | Tetraspannin | 7 | 102 | 1.5e-17 | 63.6 | 2.4e-21 | 1.8e-17 | 63.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_10348.1_53529.t1 | gi|318054566|ref|NP_001187654.1| | tetraspanin-9 [Ictalurus punctatus] | 1.0e-15 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_10348.1_53529.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10348.1_53529.t1 atgctcacaggacttaaagatgaaaaaaggagaacggcgtggaatagagtccaggaaaaatatcagtgttgtggagtgaa caactacacagactgggagggtgtgtacagtgtggtggatacaaaaacattacccgattcctgctgtggatatacaggtt gtggaacagccggaggacaagtggcatggaacattggttgttacagagatgcagaggactggttaacagagaattatatt cttttggccttagttgctgtggttgtaggggcattacagataattctaatgatatcaagcatagcaatgatagtaaagat acgacgatctaaactgcgttattccaaatactag |
|
Protein
| Protein ID | pfu_aug1.0_10348.1_53529.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10348.1_53529.t1 MLTGLKDEKRRTAWNRVQEKYQCCGVNNYTDWEGVYSVVDTKTLPDSCCGYTGCGTAGGQVAWNIGCYRDAEDWLTENYI LLALVAVVVGALQIILMISSIAMIVKIRRSKLRYSKY |
|