Gene
| Gene Model ID | pfu_aug1.0_1037.1_58345 |
|---|---|
| Locus | scaffold1037.1 : 15734 ... 20995 : - |
| To GenomeBrowser | scaffold1037.1:15734..20995 |
| Genes list of scaffold | scaffold1037.1 |
| Synonym | pfu_aug2.0_39.1_30062 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1037.1_58345.t1 | 1 | 1 | Peptidase_C2 | 24 | 180 | 5.0e-39 | 134.0 | 9.20653e-43 | 6.8e-39 | 133.6 |
| pfu_aug1.0_1037.1_58345.t1 | 2 | 1 | Calpain_III | 140 | 177 | 3.2e-28 | 98.2 | 0.63 | 4700.0 | -2.9 |
| pfu_aug1.0_1037.1_58345.t1 | 2 | 2 | Calpain_III | 200 | 344 | 3.2e-28 | 98.2 | 9.7e-32 | 7.2e-28 | 97.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1037.1_58345.t1 | gi|51011085|ref|NP_001003501.1| | calpain-9 [Danio rerio] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_1037.1_58345.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1037.1_58345.t1 atgctttcggccaaactctcgtttaatgcatccatattatccgttttggtttggaaaaggagtaaattacatcgacttaa caaatcctacgaagccctggagtacggatttgaggctgatgccttcacagacctgacaggaggcttagccgagtggtaca atcctgcagatctcaaggagcacgagttttacctaatccgggcagcctatcaatgcggtgctgtcattggatgtcttagt gtcgataaagagggaagagacgagcgtgagaagagagggatggtctccaatcattcttatgttataacaggggtagaaga aataccatttaaatcaggaacggccaaactgatacgtgtcagaaacccgtggggtgatacggaatggaacggggcgtggt cagacggtggagaggaatgggagaaggttcctgaatacgtcaaggagttgttagaagtgacgtcaagagatgacggagag ttctggatgaactataatgactttaggagtgaatattgcaacatgattgtatgtaatctgtccccggactttgatcacga tggaatcagtgacaaagcagattatcagatcaatctaagaggtcgctggcgatctaactttaatgctggaggttggttag aatgcgattcattcttcaaaaacccacagtaccttatcacaatgcaccccgatgtgtctgtacaaagaagatttaacggt cgacttcctctggtggtgtctctattacaagtgtaccacagacacgaaaaactagagggcgtggggctgaacgccatcgg tttcgagatctttcagcttttcaacaaaccaggaacagctctagggaaacatttctttgacaatatggatccattaatgc cagagaatgaggagacttatgcggaataccgcgagacatccgggcgttttttcctagacccgggacaatatatccttgtg ccaacaactcagatgccaaagcaaagcagagactaccttatgagggtattctctgttagtaaaatggagtgcagtccatt agcaaactgtgaaaactgggaaaggtga |
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Protein
| Protein ID | pfu_aug1.0_1037.1_58345.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1037.1_58345.t1 MLSAKLSFNASILSVLVWKRSKLHRLNKSYEALEYGFEADAFTDLTGGLAEWYNPADLKEHEFYLIRAAYQCGAVIGCLS VDKEGRDEREKRGMVSNHSYVITGVEEIPFKSGTAKLIRVRNPWGDTEWNGAWSDGGEEWEKVPEYVKELLEVTSRDDGE FWMNYNDFRSEYCNMIVCNLSPDFDHDGISDKADYQINLRGRWRSNFNAGGWLECDSFFKNPQYLITMHPDVSVQRRFNG RLPLVVSLLQVYHRHEKLEGVGLNAIGFEIFQLFNKPGTALGKHFFDNMDPLMPENEETYAEYRETSGRFFLDPGQYILV PTTQMPKQSRDYLMRVFSVSKMECSPLANCENWER |
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