Gene
| Gene Model ID | pfu_aug1.0_10400.1_24737 |
|---|---|
| Locus | scaffold10400.1 : 8806 ... 21265 : - |
| To GenomeBrowser | scaffold10400.1:8806..21265 |
| Genes list of scaffold | scaffold10400.1 |
| Synonym | pfu_aug2.0_25.1_16735 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_10400.1_24737.t1 | 2 | 1 | zf-C3HC4_3 | 14 | 62 | 3.6e-07 | 29.7 | 3.4e-10 | 3.6e-07 | 29.7 |
| pfu_aug1.0_10400.1_24737.t1 | 2 | 1 | zf-RING_2 | 15 | 60 | 2.9e-07 | 30.2 | 2.7e-10 | 2.9e-07 | 30.2 |
| pfu_aug1.0_10400.1_24737.t1 | 2 | 1 | zf-C3HC4_2 | 16 | 60 | 1.7e-07 | 31.1 | 1.6e-10 | 1.7e-07 | 31.1 |
| pfu_aug1.0_10400.1_24737.t1 | 1 | 1 | zf-C3HC4 | 16 | 60 | 2.6e-07 | 30.1 | 2.5e-10 | 2.6e-07 | 30.1 |
| pfu_aug1.0_10400.1_24737.t1 | 1 | 1 | zf-RING_UBOX | 16 | 58 | 5.6e-06 | 25.9 | 5.3e-09 | 5.6e-06 | 25.9 |
| pfu_aug1.0_10400.1_24737.t1 | 2 | 2 | zf-C3HC4_3 | 99 | 132 | 3.6e-07 | 29.7 | 0.21 | 220.0 | 1.6 |
| pfu_aug1.0_10400.1_24737.t1 | 2 | 2 | zf-C3HC4_2 | 163 | 191 | 1.7e-07 | 31.1 | 0.32 | 340.0 | 1.3 |
| pfu_aug1.0_10400.1_24737.t1 | 2 | 2 | zf-RING_2 | 183 | 192 | 2.9e-07 | 30.2 | 0.36 | 380.0 | 1.0 |
Transcript
| Transcript ID | pfu_aug1.0_10400.1_24737.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10400.1_24737.t1 atggctgttgatgaattgacaagtgtcatcgacaatcttacaacttgtaggatatgtatggactcatttagaactccgaa gaagttaccttgtttacacactttttgtgaagtatgttttcagaatttcatctcgacgagattcagctattataacggag gaataaactgccccacgtgtcaaacgttcgtaccgatacctggagatgcgtctcctcgtaattggtcgtccattcttcca actgatcatagattgatacgtcttatggatgctaaaaaaacaaaatcaaaaagaagaatttgcgctgcttgtgctagaaa aaacgaagtgatagatgcttactcttggtgtgttaactgtcaggaacaactttgtaatgaatgccatcatagtcattcag taaacaaggcttccctacatcataagttgattgaaattgatgaaaatttctcggatgatattcaacaacaaagcatcgag atgaattgtaaagaacacccaaccgaggaaataaaattgttttgcattacgcatgacatgtcatgctgcgtgatatgcgt acgtgaaattcatggcaattgtgaaaaagttcatattgataaatacgctgaacgtttgaagaattcagaggatctgaaga aactttccgaaggtctttatgctatgaaactgagtttcgaatcattacataaagataagagtgaaaataaaagaaagttg aaggcggacattgaacgtattagatcagacgtagaaaagttattagaacaaataactcaccgcatgagtgaactggtagc aaactttaggtctgaagtgtcaaatatcgaaatggaattcggacaagagataaaagaggaacaagacgagtttaatctct taattgatgaaatagaaaatcttcgaagccgtttgcagacatcaaaaagtcaagcctcaccatgccaattcatacaaacg ataaagcttttgtctgaagagaaaaagaaattggaaaagtacttgaaagaaaaattacccgactggaaaatacatgtatt agaaaatctcaatctagcttaa |
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Protein
| Protein ID | pfu_aug1.0_10400.1_24737.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_10400.1_24737.t1 MAVDELTSVIDNLTTCRICMDSFRTPKKLPCLHTFCEVCFQNFISTRFSYYNGGINCPTCQTFVPIPGDASPRNWSSILP TDHRLIRLMDAKKTKSKRRICAACARKNEVIDAYSWCVNCQEQLCNECHHSHSVNKASLHHKLIEIDENFSDDIQQQSIE MNCKEHPTEEIKLFCITHDMSCCVICVREIHGNCEKVHIDKYAERLKNSEDLKKLSEGLYAMKLSFESLHKDKSENKRKL KADIERIRSDVEKLLEQITHRMSELVANFRSEVSNIEMEFGQEIKEEQDEFNLLIDEIENLRSRLQTSKSQASPCQFIQT IKLLSEEKKKLEKYLKEKLPDWKIHVLENLNLA |
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